PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc02012.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 230aa MW: 25593.1 Da PI: 8.4912

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02012.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.5e-17	156	203	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zmw_sc02012.1.g00050.1.am.mk 156 KGPWTLEEDIILVSYVQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 203 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-22	147	206	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.635	151	207	IPR017930	Myb domain
SMART	SM00717	1.6E-12	155	205	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	156	203	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.14E-21	157	230	IPR009057	Homeodomain-like
CDD	cd00167	9.21E-12	158	203	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.7E-6	207	230	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVERAPHPFP VSRPCGKPVA SPDETAKSGS ETPCHEDDRS PTGCQPPMAR RMTPAAPPWR 60 DPQYPTRLNE HYLFTVQALA GTRYPSILTT VDVDGSACAV YRGTPNSHKH DQDGCAVLLH 120 GMACYCATAD DRQQLRRPSP EKMGRPPCCD KVGIKKGPWT LEEDIILVSY VQEHGPGNWR 180 SVPINTGLMR CSKSCRLRWT NYLRPGIRRG NFTPHEDGII VHLQSLLGNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-12	154	230	25	100	MYB TRANSFORMING PROTEIN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296