PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02011.1.g00190.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 409aa    MW: 44273.9 Da    PI: 11.8007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02011.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13265311455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Zmw_sc02011.1.g00190.1.am.mk 265 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIRELE 311
                                   799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.06261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-12264315No hitNo description
SuperFamilySSF474591.57E-16264318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11265311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MQSTVRSRNS SSPGCVCSGA AGLAGWLAGG GICAVLLTVR TVVGTLDDER ACVCVRARDT  60
PEIFRGSIRA RAKAARQSKP RAVHRACFTI KFVRRKTKRA DAEDTRRRTP GAWTSRALNG  120
GSDDASLPAP TLFIAARRMS IKTEPDAACM ARRRSGSRDD ANSVLWPIGF LEQALLRTCR  180
GLCHTHTLSA SVIHMRRRLL PKLRGPGAPN PRNIAVATAP SGLRPLAKGV VNQRVTWRGR  240
FDRKRSAGKR LRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPK ISKMDKASLL  300
SDAIAYIREL EDRLRGAPAE SPPAVEVKTT SLDEVALRVT TPLHAHPASR VFRAVRDAEL  360
GVVSSDLAVA DDAVTHTLVL RSTGPERLTA EAVLAALSRG TGGGGTPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-25259343282Transcription factor MYC2
5gnj_B6e-25259343282Transcription factor MYC2
5gnj_E6e-25259343282Transcription factor MYC2
5gnj_F6e-25259343282Transcription factor MYC2
5gnj_G6e-25259343282Transcription factor MYC2
5gnj_I6e-25259343282Transcription factor MYC2
5gnj_M6e-25259343282Transcription factor MYC2
5gnj_N6e-25259343282Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242255RKRSAGKRLRGRKP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944