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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02005.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 939aa MW: 102657 Da PI: 8.3312 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 519 | 569 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +g+W+AeIrdp + r +lg+f+taeeAa+a++ a+ +++g Zmw_sc02005.1.g00020.1.am.mk 519 SKFRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEEAARAYDVAAVEFRG 569 79********.**********7.....338***********************9998 PP | |||||||
2 | AP2 | 56.1 | 9.2e-18 | 810 | 860 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr++ +g+W+AeIrdp+ r +r +lg+f+tae Aa+a++ a+ +++g Zmw_sc02005.1.g00020.1.am.mk 810 SKFRGVRRRQ-WGKWAAEIRDPY----RaARKWLGTFDTAEAAARAYDVAAVEFKG 860 79*****887.**********74....57**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51445 | 1.47E-51 | 72 | 329 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.5E-29 | 75 | 228 | IPR013781 | Glycoside hydrolase, catalytic domain |
SMART | SM00642 | 1.3E-22 | 75 | 332 | IPR006047 | Glycosyl hydrolase, family 13, catalytic domain |
CDD | cd11314 | 1.67E-121 | 76 | 343 | No hit | No description |
Pfam | PF00128 | 3.5E-11 | 98 | 172 | IPR006047 | Glycosyl hydrolase, family 13, catalytic domain |
Gene3D | G3DSA:3.20.20.80 | 1.3E-15 | 229 | 337 | IPR013781 | Glycoside hydrolase, catalytic domain |
SMART | SM00810 | 9.7E-26 | 333 | 393 | IPR012850 | Alpha-amylase, C-terminal beta-sheet |
Pfam | PF07821 | 1.8E-14 | 334 | 389 | IPR012850 | Alpha-amylase, C-terminal beta-sheet |
SuperFamily | SSF51011 | 8.63E-14 | 337 | 389 | No hit | No description |
Gene3D | G3DSA:2.60.40.1180 | 2.5E-21 | 338 | 389 | IPR013780 | Glycosyl hydrolase, all-beta |
CDD | cd00018 | 4.84E-30 | 519 | 579 | No hit | No description |
Pfam | PF00847 | 8.4E-12 | 519 | 569 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 519 | 578 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-36 | 520 | 583 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.541 | 520 | 577 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-30 | 520 | 578 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 521 | 532 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 543 | 559 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-21 | 810 | 869 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.5E-10 | 810 | 859 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.99E-17 | 810 | 868 | No hit | No description |
SMART | SM00380 | 2.9E-32 | 811 | 874 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.777 | 811 | 868 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 811 | 869 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004556 | Molecular Function | alpha-amylase activity | ||||
GO:0005509 | Molecular Function | calcium ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 939 aa Download sequence Send to blast |
MFMGFCSEDV FLVVMKEMCR LAWVLVHLIL NKKSAATPER NRAAAESCKW SAGRFLTLAV 60 LIVFLGASKN YAAGQILFQG FNWESWKQQG GWYNLLMSKV EDIAEAGITH VWLPPPSHSV 120 AEQGYMPGRL YDLDASKYGN KAQLKSLIQA FHAKGVKVIA DIVINHRTAE HEDGRGIYCM 180 FEGGTPDSRL DWGPHMICRD DRHFDAWRLD FAKGYSADVA KPNYNQSAHR QELVNWVDRV 240 GRSGPATVFD FTTKGILNVA VEGEPPTAWR LAVTFVDNHD TGSTQHMWPF PSEKVMQGYA 300 YILTHPGNPC IFYDHFFDWG LKNEIAHLVS IRNRHGIHPE SELRIIASDA DLYLAEIDGK 360 VITKLGPRYD IEHLIPEGFQ IAAHGDGYAR PCATFLRHRR TGASMVPRLE RGGFTLPNAE 420 QENSLFLRAL ISVVSGDTAV PTLDDLAATK PHVAAATAPA AAAAYCPRCG VLGCPGCEPF 480 AGNAAATTGL SSDSEEERES ASHVVTGGVG KRRRRARASK FRGVRRRPWG KWAAEIRDPH 540 RAVRKWLGTF DTAEEAARAY DVAAVEFRGR RAKLNFPADA AAVLSAHSSW AMVQPVAESL 600 RESCGSNAAS PVGRLPADTT FQFTLSWIIG WLRRGSGLHS DCPISSTSEH NRNVPRTVEP 660 TTDCTPRSVA VPVGHLDRHV VFKVASFSRD RREHGAMAPR LGRGGFMLRN ADQEDSLFVS 720 ALISVVSGDT TAPTLDVAET KPDVAAAPAV YCARCGADGC PGRCEFFGAA DQAAATTGSS 780 GDSEEHEGES TSRVVTGGAG KRIRRRRRVS KFRGVRRRQW GKWAAEIRDP YRAARKWLGT 840 FDTAEAAARA YDVAAVEFKG PHAKLNFPAA APAATASSSA SAQALPPPQN LHEKCGSNAA 900 SPVHMAREPA GPPVAKDPEI WDGLNEIMMI DDGSFWRMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wn6_A | 0.0 | 75 | 389 | 2 | 399 | Alpha-amylase |
3wn6_B | 0.0 | 75 | 389 | 2 | 399 | Alpha-amylase |
3wn6_C | 0.0 | 75 | 389 | 2 | 399 | Alpha-amylase |
3wn6_D | 0.0 | 75 | 389 | 2 | 399 | Alpha-amylase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 510 | 526 | KRRRRARASKFRGVRRR |
2 | 511 | 527 | RRRRARASKFRGVRRRP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |