PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zmw_sc02002.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 290aa MW: 32290.7 Da PI: 6.4086

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02002.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	304.5	2.5e-93	1	285	106	374
GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 +e e+ vH++D++ +QW+ Ll+ La+Rpegpp+lR+T+v++ +k+ l +t+ L+k Ae+l+vpf+fn+ v++rl Zmw_sc02002.1.g00150.1.am.mk 1 MEAEKIVHVVDLGGADATQWLELLHLLAARPEGPPHLRLTAVSE----HKDVLTQTAMALSKEAERLDVPFQFNP-VVTRL 76 678999************************************....9**********************.79* PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.....................desvsleserdevLklvkslsPkvvvvveqea 246 ++l++e+Lrvk+gEala+ ++lqlh ll + +++s+ d++L+++++lsPkv+vv+eqea Zmw_sc02002.1.g00150.1.am.mk 77 DALDVESLRVKTGEALAITSSLQLHCLLasdddtaaggkdkkenrrspeSGLSPSTSRADAFLSALWGLSPKVMVVTEQEA 157 *******************************************997522233444789***************** PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 +hn++ + erf+eal+yy+alfd+le+ ++r s er+ vEr +lg+ei+n+vac gaerrerhe+l +W +r+e aGF+ v Zmw_sc02002.1.g00150.1.am.mk 158 SHNAPALTERFVEALNYYAALFDCLEVVAARGSVERARVERWMLGEEIKNIVACDGAERRERHERLDRWARRMEGAGFGRV 238 ***************************************************************************** PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 pls++a qa++ + + dg++v ee+gs++l+W+dr++++vSaWr Zmw_sc02002.1.g00150.1.am.mk 239 PLSYYALLQARRAAQGLGCDGFKVREEKGSFFLCWQDRAIFTVSAWR 285 ********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.145	1	265	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.6E-91	1	285	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEAEKIVHVV DLGGADATQW LELLHLLAAR PEGPPHLRLT AVSEHKDVLT QTAMALSKEA 60 ERLDVPFQFN PVVTRLDALD VESLRVKTGE ALAITSSLQL HCLLASDDDT AAGGKDKKEN 120 RRSPESGLSP STSRADAFLS ALWGLSPKVM VVTEQEASHN APALTERFVE ALNYYAALFD 180 CLEVVAARGS VERARVERWM LGEEIKNIVA CDGAERRERH ERLDRWARRM EGAGFGRVPL 240 SYYALLQARR AAQGLGCDGF KVREEKGSFF LCWQDRAIFT VSAWRGRRFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-44	1	287	124	381	Protein SCARECROW
5b3h_A	7e-44	1	287	123	380	Protein SCARECROW
5b3h_D	7e-44	1	287	123	380	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819415.1	0.0	scarecrow-like protein 3
Refseq	XP_025819416.1	0.0	scarecrow-like protein 3
Swissprot	Q9LPR8	1e-120	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	K3XHR4	0.0	K3XHR4_SETIT; Uncharacterized protein
STRING	Si001436m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]