PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01996.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29390 Da PI: 9.8206 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 99 | 149 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp k++r++lg+f++ae+Aa+a++aa++ l+g Zmw_sc01996.1.g00070.1.am.mk 99 TRFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARTLRG 149 589*******.**********83...36*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-13 | 99 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-17 | 99 | 157 | No hit | No description |
PROSITE profile | PS51032 | 23.472 | 100 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-22 | 100 | 158 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 100 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-36 | 100 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MDKIGGKEGA GGKRKRKRER RESRQGGWWT GGGGSVAGGW ECAVRGGSAN KQTFQLSPPH 60 HPRQLPDYPA PRTAGFIGGE GMRRGGPVAA AGPEGDLVTR FRGVRKRPWG RYAAEIRDPA 120 KKARVWLGTF DSAEDAARAY DAAARTLRGP KARTNFPLPV AAHHHHQRHA AYTAPYTAVA 180 ARPAISSMSS TVESFGGARS RPALPPRPPP PPIPDGDCRS DCGSSASVVD DDCADAATSP 240 SCRLPLCLDL NLPPGYCGFV CYGDEDELRL TELRL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 101 | 160 | 6 | 66 | ATERF1 |
3gcc_A | 5e-21 | 101 | 160 | 6 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 12 | 20 | KRKRKRERR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951621.1 | 1e-56 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | O80339 | 1e-30 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A3L6RU45 | 1e-64 | A0A3L6RU45_PANMI; Ethylene-responsive transcription factor 3-like | ||||
STRING | Pavir.Ab00660.1.p | 3e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Publications ? help Back to Top | |||
---|---|---|---|
|