PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01994.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 668aa    MW: 71471 Da    PI: 6.4532
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01994.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4102.2e-1253036632374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal 81 
                                    +lLl+ Ae v++++l  a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp+++ +     s++++a+
  Zmw_sc01994.1.g00090.1.sm.mk 303 LTLLLQSAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPATSPAAALlNSRVATAF 383
                                   579************************************************************8777776656899999** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                   ++f+ +sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++++Tg+gs    s e le+tg
  Zmw_sc01994.1.g00090.1.sm.mk 384 QVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVKLTGLGS----SMEVLEATG 460
                                   ********************************************************************....********* PP

                          GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                   +rL++fA++lg+pfef + va++  ++++e+L v ++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++ve
  Zmw_sc01994.1.g00090.1.sm.mk 461 KRLSDFADTLGLPFEFCA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVE 534
                                   ******************.7*************************9..999999999999....***************** PP

                          GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                   q+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r  + + +++Wre+l ++GF
  Zmw_sc01994.1.g00090.1.sm.mk 535 QDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGF 613
                                   *****.899****************************************************988887.************* PP

                          GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   ++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  Zmw_sc01994.1.g00090.1.sm.mk 614 RAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 663
                                   *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.731276643IPR005202Transcription factor GRAS
PfamPF035147.6E-123303663IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MGSSSLLLFP SSASAASRAY SSAHATTTST LSSSSHSLLS PLPYPSSYSQ QDPHHLHLLL  60
LHRLDGHQQE QVAMVRKRPA PDMDLPPPRR HVTGDLSDVT AAAAASQQQH PPSASAQLPA  120
LPTQLHLPAF QQHGGEVDVA PPQVQPGEVT TXXXAWVDGI IRDIIGSSGP AVSVAQLIQN  180
VREIIHPCNP GLASVLELRL RSLLAVADPA HPPPHQHPGL VHHHTAAPGV AALPPPQSLP  240
DKRRHEAPPP PCQEEQPQSP KAPSAEETAA AAAAAAAAAA AAAKERKEEQ RRKQRDEEGL  300
HLLTLLLQSA ESVNADNLDD AHQTLLEIAE LATPFGTSTQ RVAAYFAEAM SARLVSSCLG  360
LYAPLPATSP AAALLNSRVA TAFQVFNGIS PFVKFSHFTA NQAIQEAFER EDRVHIIDLD  420
IMQGLQWPGL FHILASRPGG PPRVKLTGLG SSMEVLEATG KRLSDFADTL GLPFEFCAVA  480
EKAGNVDPEK LGVTRREAVA VHWLHHSLYD VTGSDSNTLW LIQRLAPKVV TMVEQDLSHS  540
GSFLARFVEA IHYYSALFDS LDASYGEDSP ERHVVEQQLL SREIRNVLAV GGPARSGDVK  600
FGSWREKLAQ SGFRAASLAG SAAAQASLLL GMFPSDGYTL VEENGALKLG WKDLCLLTAS  660
AWRPIQAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02866643380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977413.10.0protein SCARECROW 1-like
SwissprotQ9FUZ70.0SCR_MAIZE; Protein SCARECROW
TrEMBLA0A3L6PCB60.0A0A3L6PCB6_PANMI; Scarecrow
STRINGGRMZM2G131516_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Publications ? help Back to Top
  1. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]