PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 232aa MW: 24732.3 Da PI: 10.761

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01992.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.4	3.8e-28	45	92	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+l + Zmw_sc01992.1.g00030.1.am.mk 45 KPIENATNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLTT 92 78*******************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.044	37	97	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-33	37	96	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.7E-28	39	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-25	39	97	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.25E-33	39	146	No hit	No description
Pfam	PF00319	6.1E-25	47	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.7E-28	59	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.7E-28	74	95	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MLNMMSQTDL SCCPSKVKEQ PAPANSGPSS GSTKPGIIRG RIEIKPIENA TNRQVTFCKR 60 RNGLLKKAYE LSVLCDAEVA LVVFSSRGRL TTAAEEKRGA CIASGDDTSK ESWCLGGNAK 120 SREAPLHVGV KATIERYKKA NSDSSNTGTV AEVNAQTTRI IRLAVKQSKS RRGCWAKRCG 180 AVDRPAAAQP GMTSLWAGAS KWTGCSATTG QISRRKKATG QAASTFLLNR PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n6j_A	4e-15	39	94	2	57	Myocyte-specific enhancer factor 2B
1n6j_B	4e-15	39	94	2	57	Myocyte-specific enhancer factor 2B
1tqe_P	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
1tqe_R	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
1tqe_S	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
6c9l_A	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
6c9l_B	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
6c9l_C	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
6c9l_D	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
6c9l_E	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
6c9l_F	3e-15	39	94	3	58	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269\|PubMed:11828031, ECO:0000269\|PubMed:16326928, ECO:0000269\|PubMed:9869408}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816640.1	3e-50	MADS-box transcription factor 3 isoform X3
Swissprot	Q40704	8e-39	MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBL	A0A0A9TLG6	3e-55	A0A0A9TLG6_ARUDO; Uncharacterized protein
STRING	Pavir.Ea00226.1.p	3e-49	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34716	3	4

Publications ? help Back to Top
Kyozuka J,Shimamoto K Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants. Plant Cell Physiol., 2002. 43(1): p. 130-5 [PMID:11828031] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]