PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01968.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 562aa    MW: 60128.5 Da    PI: 9.0738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01968.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-06176198123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cgk F r  nL+ H r H
  Zmw_sc01968.1.g00070.1.am.mk 176 FVCEICGKGFQRDQNLQLHRRGH 198
                                   89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-7175198No hitNo description
PROSITE profilePS5015711.614176198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-5176198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012176198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
SMARTSM00355130219249IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.19E-7249274No hitNo description
SMARTSM00355160254274IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MERAKLDTKQ GQKQKKWRGR LGLAFFAFAC PLIPVATVPL PLYLLLSLSR PSKAAPSLPF  60
FLSFSPVRTA ACSLCLGYSL PSCLLAVPGV QRLLSSHTPL PLQDQAEAAH QDGGMSNLTS  120
SASGPNNNPP PAPPPPPPAP AASAGNKRKR SLPGNPDPDA EVIALSPATL MATNRFVCEI  180
CGKGFQRDQN LQLHRRGHNL PWKLKQRGTG KEAARKKVYV CPEASCVHHD PARALGDLTG  240
IKKHFFRKHG EKKWKCDKCS KKYAVHSDWK AHSKICGTRE YKCDCGTIFS RRDSFITHRA  300
FCDALTEESA KAIGLNAMHA AAPAVLFSPP QPTSQVMQQH QELAAFREHH NHQEVLQPLP  360
QQQVPAAQQQ HCNYAMKTEM LPWPMMPYDQ HAHPLLQPLC NAAAQCSATS APLPSAHLSA  420
TALLQKAVEM GATISTAGGG GAHYTQMAGA ARSAPGSATF GLGLPGLNAQ QVDTAMGGLV  480
RSASHGRSGE DGASGGGASD GMTRDFLGLR AFSRGDILSL AGFDSCIGAV NANTSVSCYE  540
PQEHAQQQQS NNEPWHGMGS HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34250316369Zinc finger protein JACKDAW
5b3h_F5e-34250316369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-111IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLK3XHB60.0K3XHB6_SETIT; Uncharacterized protein
STRINGSi001287m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]