PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01967.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 287aa    MW: 30293.6 Da    PI: 4.682
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01967.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.5e-07447542
                      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                  +C+ ++ +++   C  ++  lC  C    H+       H+++pl
  Zmw_sc01967.1.g00030.1.sm.mk  4 NCDVCGGEPAAVLCCADEAALCSACDRRVHRAnklagkHRRIPL 47
                                  7*****************************77999999999886 PP

2zf-B_box24.17.3e-085998437
                      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                                  + C+ ++e +   fC +++  lC+dC + +H+       H
  Zmw_sc01967.1.g00030.1.sm.mk 59 PLCDVCKERRGLVFCVEDRAILCADCDDPIHSAndltakH 98
                                  78*****************************655555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
SMARTSM003366.4E-10147IPR000315B-box-type zinc finger
PfamPF006433.4E-6447IPR000315B-box-type zinc finger
CDDcd000211.35E-7547No hitNo description
PROSITE profilePS501199.18656103IPR000315B-box-type zinc finger
SMARTSM003363.6E-1456103IPR000315B-box-type zinc finger
PfamPF006431.4E-55999IPR000315B-box-type zinc finger
CDDcd000211.60E-859103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRVNCDVCGG EPAAVLCCAD EAALCSACDR RVHRANKLAG KHRRIPLLHP SSDDGATGPL  60
CDVCKERRGL VFCVEDRAIL CADCDDPIHS ANDLTAKHSR FLLVGAKLSA AEAPSSPDCG  120
GGESDGGVAA ACAQEQDSST DRSSVLERGD NHNGSGGGAM ISDYLTNICP GWRVDDLLVD  180
DSPFSATAPK PGRDEQVPSM DADLFDVVAG RSEKRGSGAW GPSWTSTGDL GFEEVPTAPT  240
AAKPGKQGRV RETFWNNNMD NDSDAFAVPE ITPPPAKKAR PSSFWCF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812143.11e-114B-box zinc finger protein 20-like
TrEMBLA0A2S3HGD11e-113A0A2S3HGD1_9POAL; Uncharacterized protein
STRINGSi006993m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430