PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01965.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 766aa MW: 85616.9 Da PI: 5.4453

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01965.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	347.6	2e-106	385	757	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++ L++cA+a+s+gdl+ a+++L+++++++s +g++++Rla++f+++L+arla+++s++yk+l +++ts +++ l+a+ Zmw_sc01965.1.g00200.1.am.mk 385 LRTMLIHCAQALSTGDLRGANETLKQIKQHSSLTGNATERLAHCFAQGLEARLAGTGSQVYKSLMSKRTS---VVDYLKAY 462 5789**********************************************************999999...**** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 klf +s + k+ h+ N++I +av+g++++Hi+ +++++G+QWp Ll+ La+ ++gpp++R Tg++ p++g + +le+ Zmw_sc01965.1.g00200.1.am.mk 463 KLFMAASCFKKVKHVFSNRTIADAVAGKSKLHIVEYGVQHGFQWPGLLHFLANMEGGPPEVRFTGIDLPQPGfrPAYQLEK 543 *******************************************************************9999** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvv 239 tgerL++ A++++vpf+f++ +a ++e++++e+L+++p+E+l+Vn+ l +l+de+v ++s +rd vLk +++++Pkv+ Zmw_sc01965.1.g00200.1.am.mk 544 TGERLSNCARQFHVPFKFHA-IAAKWETVTPEDLNIDPDEVLVVNCECYLDKLMDETVVVDSpsPRDMVLKNIRNMRPKVF 623 ****************.799*****************************98888779************ PP GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 +++ + +++ Fl+rf eal +ysa fd+l+a++pr+++ r +Er +lgr++ nv+acega+r+er et+++W+ r + Zmw_sc01965.1.g00200.1.am.mk 624 IHCVVNGTFGAPFFLTRFREALFFYSAQFDMLDATIPRDNDVRLLIERDILGRSALNVIACEGADRVERPETYKQWQVRNN 704 ***************************************************************************** PP GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +aG++++pl+ +++k ++ + +++ + + ++e++ +l++gWk+r L+++S W Zmw_sc01965.1.g00200.1.am.mk 705 RAGLRQLPLRPEIVKLVRDKVTNHYHKDFLLDEDHRWLLQGWKGRVLYAISTW 757 *********************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.607	359	738	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-104	385	757	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MGKVELFGSV NLGGSSLCTW SGRRYHSPDS DRRSDFASWE EESLLHLVYS STVPSADPVA 60 AAVASPFRRL PGSFPLSSPS SRLQSTPEAL IFNSIHVSAH PTSATPLLLA MAATPEDILG 120 QGGYLAVPEP FSPSVFLDLP PTPRPDGGDD PASSDDLVLP FISRMLMEED IDENFFYQYP 180 DHPALLTSQQ PYAEILSAPS SSSDSATTNT TLTPSSFSDA AEPTWPYDPI ELVQLLRSPP 240 CPDEGLGLHD FTADDDSAVL FDGATPGFEQ ISMVDAKPLT VCNVKKEEVV VDGLSIFRER 300 SNGRGRKNRH HEDDLEMEIG RSSKLMMQEQ EDSDAQEMYR EIMSFNVEEF MKRMQDLRIA 360 KDSESEKSSR KGVRGRQGAD EVVDLRTMLI HCAQALSTGD LRGANETLKQ IKQHSSLTGN 420 ATERLAHCFA QGLEARLAGT GSQVYKSLMS KRTSVVDYLK AYKLFMAASC FKKVKHVFSN 480 RTIADAVAGK SKLHIVEYGV QHGFQWPGLL HFLANMEGGP PEVRFTGIDL PQPGFRPAYQ 540 LEKTGERLSN CARQFHVPFK FHAIAAKWET VTPEDLNIDP DEVLVVNCEC YLDKLMDETV 600 VVDSPSPRDM VLKNIRNMRP KVFIHCVVNG TFGAPFFLTR FREALFFYSA QFDMLDATIP 660 RDNDVRLLIE RDILGRSALN VIACEGADRV ERPETYKQWQ VRNNRAGLRQ LPLRPEIVKL 720 VRDKVTNHYH KDFLLDEDHR WLLQGWKGRV LYAISTWVAE GSNSIF

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MGKVELFGSV NLGGSSLCTW SGRRYHSPDS DRRSDFASWE EESLLHLVYS STVPSADPVA  60
AAVASPFRRL PGSFPLSSPS SRLQSTPEAL IFNSIHVSAH PTSATPLLLA MAATPEDILG  120
QGGYLAVPEP FSPSVFLDLP PTPRPDGGDD PASSDDLVLP FISRMLMEED IDENFFYQYP  180
DHPALLTSQQ PYAEILSAPS SSSDSATTNT TLTPSSFSDA AEPTWPYDPI ELVQLLRSPP  240
CPDEGLGLHD FTADDDSAVL FDGATPGFEQ ISMVDAKPLT VCNVKKEEVV VDGLSIFRER  300
SNGRGRKNRH HEDDLEMEIG RSSKLMMQEQ EDSDAQEMYR EIMSFNVEEF MKRMQDLRIA  360
KDSESEKSSR KGVRGRQGAD EVVDLRTMLI HCAQALSTGD LRGANETLKQ IKQHSSLTGN  420
ATERLAHCFA QGLEARLAGT GSQVYKSLMS KRTSVVDYLK AYKLFMAASC FKKVKHVFSN  480
RTIADAVAGK SKLHIVEYGV QHGFQWPGLL HFLANMEGGP PEVRFTGIDL PQPGFRPAYQ  540
LEKTGERLSN CARQFHVPFK FHAIAAKWET VTPEDLNIDP DEVLVVNCEC YLDKLMDETV  600
VVDSPSPRDM VLKNIRNMRP KVFIHCVVNG TFGAPFFLTR FREALFFYSA QFDMLDATIP  660
RDNDVRLLIE RDILGRSALN VIACEGADRV ERPETYKQWQ VRNNRAGLRQ LPLRPEIVKL  720
VRDKVTNHYH KDFLLDEDHR WLLQGWKGRV LYAISTWVAE GSNSIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-41	391	758	24	378	Protein SCARECROW
5b3h_D	1e-41	391	758	24	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617900.1	0.0	scarecrow-like protein 9
Refseq	XP_025826965.1	0.0	scarecrow-like protein 34
TrEMBL	A0A1Z5RKX2	0.0	A0A1Z5RKX2_SORBI; Uncharacterized protein
STRING	ORGLA11G0190200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297