PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01953.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 570aa MW: 62459.4 Da PI: 11.811 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.1 | 4e-22 | 315 | 404 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++ + ++ +qC++k+e+l+kry+++++++++r+++ Zmw_sc01953.1.g00130.1.am.mk 315 CWTHEETLALIEAYRDRWESLRKGNLRAADWDDVAEAVtnrcgrFPTATPKTGVQCRHKIEKLRKRYRAERARSSGRSKG- 394 8*************************************999988888899*************************98443. PP trihelix 76 sstcpyfdqle 86 ++p++ l+ Zmw_sc01953.1.g00130.1.am.mk 395 -PKWPFYPLLH 404 .47****9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.1E-22 | 314 | 405 | No hit | No description |
PROSITE profile | PS50090 | 6.098 | 316 | 378 | IPR017877 | Myb-like domain |
SMART | SM00595 | 4.6E-6 | 323 | 411 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MTWLSSVRFL PPQREPIRTY HHHEALLGVL APSNPSGDKL SKPLIDKLHI VAEQHLEGFL 60 LRPLALGPLA VSPPHKDAHE KVRSVRGGDR RAERRAGGRP GARLSSFRAR TCDATAAARP 120 ARGGIIKRVI RSAWGWHPPT RVPAAGRPRP TGKRRGGAAA TTHPPRPDTA HGHRGTALRT 180 MRRRGLILIP LIRRTPRLRD KPLSITAAPL RPPRTRRCPV PLPLPSRSFQ RAAHTRGPPP 240 HRLPPPPYYD RRVRRRRRSA MSSSSSDPAR DDAVSSPDLP PLGLPGAAAA AAAAAASSGG 300 GMLGGGSGRR LPPPCWTHEE TLALIEAYRD RWESLRKGNL RAADWDDVAE AVTNRCGRFP 360 TATPKTGVQC RHKIEKLRKR YRAERARSSG RSKGPKWPFY PLLHDLAGNG APDPSPNAII 420 KIKTKGPAPP ASSPSPVSSP SSEEEAVRSR SLHGLISNGG AESGLRFTIP KASRTRPAAT 480 RVEKTSNEDD AESEAMSEVV AALRAVGEGF VRMEERRLEL SLQLEKERME SEMKRTQAML 540 DAQQLFLEAF LGKQQPPHKR ARISPTMEED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 257 | RRVRRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659928.1 | 1e-152 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A1X7YE92 | 1e-151 | A0A1X7YE92_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A3L6DCX4 | 1e-151 | A0A3L6DCX4_MAIZE; Trihelix transcription factor ASIL2 | ||||
STRING | GRMZM2G428470_P01 | 1e-151 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |