PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01949.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CO-like

Protein Properties

Length: 784aa MW: 86290.8 Da PI: 9.4674

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01949.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.1	2.3e-05	346	377	13	38
zf-B_box 13 elqlfCedCqqllCedClleeHkg......Ht 38 +++++C ++ +lC+ C + H+ H+ Zmw_sc01949.1.g00050.1.am.mk 346 RARWYCAADDAFLCQACDASVHSAnplarrHE 377 589*******************6566766776 PP
2	CCT	66.8	5.9e-23	720	762	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ Zmw_sc01949.1.g00050.1.am.mk 720 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 762 9****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.0079	339	381	IPR000315	B-box-type zinc finger
CDD	cd00021	2.46E-6	346	381	No hit	No description
Pfam	PF06203	1.1E-17	720	762	IPR010402	CCT domain
PROSITE profile	PS51017	15.993	720	762	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MLDRPAHGGA ASLRRLASAI PSEGLTAPRH PQAARSVRRR ELLLPSNPID RRGRARANPG 60 LYEHLPDAGW LGLGTALRST LVGRTAHCGA AAAVRRSPAK WQVNARIWAR AEQDRRVQVL 120 YLRHRIKVPV VSCRGWLRAL YNGSAWDEEE GKRHRSAPSL PRRGEGGNAW SERDAAVGLD 180 FGIVGFEKTQ RHETSLLQAP VQRINTTAQP SLAYYNTDTG RALRPVTSPR QRWRHRIRPT 240 PGCGTGYTPG WEGARRIVVM CFLEGWTKGW ARHPSRGPRK NPGLSNGISQ NWIRYFQRTN 300 CVSDKACAWA LTSTMKVEST LVTAAETHEQ QFDSGGGRRR GXXXXRARWY CAADDAFLCQ 360 ACDASVHSAN PLARRHERLR LRPTSPPPHE SSLDQAIAAR STSTQRRPVA PAWSRRKARS 420 RRPQVKSVGQ LLSRKLVVPE LAAESSEERK AEEDGSEETQ LLCHRVPSFD RALAELCSPL 480 PVDDAAAAAS SSRDNINGAM EDASKQDSVD ATSSPVQQLP DSLSGFGPTD AELSEFAADM 540 EALLGQGMDD SNELDESFYM ESLGLMTPAE DDGGRVKMEP HGDISNCDGA LGIGRHTDMK 600 SVASAEVLDI DSKIPNCCSP TAVDDEDYED SFEQKAPMAS NGDAPDAQFL RRSLDLRLNY 660 EAIIESWGTS PWTDGQRPCV RLDDFWPHHA YHSGEWTPGG GQPPGVGPLT PPRWGTDGCR 720 EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRPGAGAGGG AAVTPAAPCA 780 VTST

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MLDRPAHGGA ASLRRLASAI PSEGLTAPRH PQAARSVRRR ELLLPSNPID RRGRARANPG  60
LYEHLPDAGW LGLGTALRST LVGRTAHCGA AAAVRRSPAK WQVNARIWAR AEQDRRVQVL  120
YLRHRIKVPV VSCRGWLRAL YNGSAWDEEE GKRHRSAPSL PRRGEGGNAW SERDAAVGLD  180
FGIVGFEKTQ RHETSLLQAP VQRINTTAQP SLAYYNTDTG RALRPVTSPR QRWRHRIRPT  240
PGCGTGYTPG WEGARRIVVM CFLEGWTKGW ARHPSRGPRK NPGLSNGISQ NWIRYFQRTN  300
CVSDKACAWA LTSTMKVEST LVTAAETHEQ QFDSGGGRRR GXXXXRARWY CAADDAFLCQ  360
ACDASVHSAN PLARRHERLR LRPTSPPPHE SSLDQAIAAR STSTQRRPVA PAWSRRKARS  420
RRPQVKSVGQ LLSRKLVVPE LAAESSEERK AEEDGSEETQ LLCHRVPSFD RALAELCSPL  480
PVDDAAAAAS SSRDNINGAM EDASKQDSVD ATSSPVQQLP DSLSGFGPTD AELSEFAADM  540
EALLGQGMDD SNELDESFYM ESLGLMTPAE DDGGRVKMEP HGDISNCDGA LGIGRHTDMK  600
SVASAEVLDI DSKIPNCCSP TAVDDEDYED SFEQKAPMAS NGDAPDAQFL RRSLDLRLNY  660
EAIIESWGTS PWTDGQRPCV RLDDFWPHHA YHSGEWTPGG GQPPGVGPLT PPRWGTDGCR  720
EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRPGAGAGGG AAVTPAAPCA  780
VTST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	730	746	RRTRLFAKKIRYEVRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661075.1	1e-173	zinc finger protein CONSTANS-LIKE 16 isoform X1
TrEMBL	A0A3Q8AVS7	1e-177	A0A3Q8AVS7_BAMOL; Constans-like protein
STRING	Si017124m	1e-173	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3283	30	58