PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01937.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 412aa MW: 44526.4 Da PI: 6.5103 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.3 | 3.7e-10 | 311 | 367 | 35 | 89 |
EEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 35 tltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 l + d++ +W++k++y ++ks++y+l+ eFvk ++L++gD++v++ ++r++ Zmw_sc01937.1.g00090.1.sm.mk 311 ILEMDDLELpDVWKFKYRYwpNNKSRMYILE-SAGEFVKRHKLEAGDVFVIYQHKRTG 367 344444222689*******888888888888.99*****************9544433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0077 | 285 | 380 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.68E-11 | 294 | 368 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-14 | 295 | 375 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-10 | 296 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MADATGSSSG AGAGAGAATG HGDLGRGVTQ GQCQVYLTSS TNRIAPNAAN IYPPTHQYPI 60 GLIPAQRPMN SSPIAAPPQQ LVPPPQYHVV QSQPPPIAGR YQHQDYPAYG NTAPSTTPVG 120 FAGWRMYSNT LMSFSQPVPL SGGGGNSNIS VVNSNGFHQN SSSYATTMWT NYVPSNQPYY 180 TNYAPAATIN PVLQAPAIQN INNHQERDLG FAPSFGATAP TVPAIHYEGM PQRTTNSSTA 240 QLFQEVKNST FRTSGPGGEI EGSEASEEQD PAPELEAQNQ LGQGFRDINA TDNTRDAEAN 300 LPTLIDKDGI ILEMDDLELP DVWKFKYRYW PNNKSRMYIL ESAGEFVKRH KLEAGDVFVI 360 YQHKRTGRHV ARAVKAIPQS SNLNLLECQC MREGRSSEEC GFAVSAPPPK KT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-22 | 295 | 387 | 25 | 116 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-22 | 295 | 387 | 25 | 116 | B3 domain-containing transcription factor FUS3 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825471.1 | 2e-90 | putative B3 domain-containing protein Os04g0676650 | ||||
TrEMBL | A0A3L6Q928 | 9e-96 | A0A3L6Q928_PANMI; Putative B3 domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11817 | 28 | 35 |