PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01937.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 412aa    MW: 44526.4 Da    PI: 6.5103
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01937.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.33.7e-103113673589
                                   EEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                            B3  35 tltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                    l + d++   +W++k++y  ++ks++y+l+    eFvk ++L++gD++v++ ++r++
  Zmw_sc01937.1.g00090.1.sm.mk 311 ILEMDDLELpDVWKFKYRYwpNNKSRMYILE-SAGEFVKRHKLEAGDVFVIYQHKRTG 367
                                   344444222689*******888888888888.99*****************9544433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0077285380IPR003340B3 DNA binding domain
CDDcd100171.68E-11294368No hitNo description
Gene3DG3DSA:2.40.330.107.7E-14295375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-10296372IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MADATGSSSG AGAGAGAATG HGDLGRGVTQ GQCQVYLTSS TNRIAPNAAN IYPPTHQYPI  60
GLIPAQRPMN SSPIAAPPQQ LVPPPQYHVV QSQPPPIAGR YQHQDYPAYG NTAPSTTPVG  120
FAGWRMYSNT LMSFSQPVPL SGGGGNSNIS VVNSNGFHQN SSSYATTMWT NYVPSNQPYY  180
TNYAPAATIN PVLQAPAIQN INNHQERDLG FAPSFGATAP TVPAIHYEGM PQRTTNSSTA  240
QLFQEVKNST FRTSGPGGEI EGSEASEEQD PAPELEAQNQ LGQGFRDINA TDNTRDAEAN  300
LPTLIDKDGI ILEMDDLELP DVWKFKYRYW PNNKSRMYIL ESAGEFVKRH KLEAGDVFVI  360
YQHKRTGRHV ARAVKAIPQS SNLNLLECQC MREGRSSEEC GFAVSAPPPK KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-2229538725116B3 domain-containing transcription factor FUS3
6j9b_D2e-2229538725116B3 domain-containing transcription factor FUS3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825471.12e-90putative B3 domain-containing protein Os04g0676650
TrEMBLA0A3L6Q9289e-96A0A3L6Q928_PANMI; Putative B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835