PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01934.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 193aa MW: 22182.5 Da PI: 4.8206

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01934.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.3	2.4e-24	45	94	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ rqv fskRr+g++KKA+EL LCda+va+i+fs+ g+lye++s Zmw_sc01934.1.g00180.1.sm.mkhc 45 RIEDRVSRQVRFSKRRKGLFKKAFELAELCDAQVALIVFSPAGRLYEFAS 94 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.287	36	96	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-30	36	95	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.09E-34	38	106	No hit	No description
SuperFamily	SSF55455	1.09E-27	38	113	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	38	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-24	45	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	58	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	73	94	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MDAEEARNPE LRQREEEARA GCEGDGRDEM KKAAKKKRGR VEMRRIEDRV SRQVRFSKRR 60 KGLFKKAFEL AELCDAQVAL IVFSPAGRLY EFASSNSSIE TIFDRYWNLA NTTNDLNIEV 120 RDSQNDCNMQ REQSSASSFS DHLNNIAQWV LEPNLNDLNV DELREYTADE GDWASSNSWL 180 VMKSFGSSIK EGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n6j_A	9e-15	38	96	2	60	Myocyte-specific enhancer factor 2B
1n6j_B	9e-15	38	96	2	60	Myocyte-specific enhancer factor 2B
1tqe_P	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
1tqe_Q	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
1tqe_R	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
1tqe_S	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_A	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_B	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_C	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_D	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_E	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_F	7e-15	38	96	3	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820080.1	2e-61	MADS-box transcription factor 51-like isoform X1
Refseq	XP_025820081.1	2e-61	MADS-box transcription factor 51-like isoform X1
Swissprot	Q9XJ61	2e-34	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A2T7D9Y5	6e-61	A0A2T7D9Y5_9POAL; Uncharacterized protein
STRING	Si014540m	2e-58	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]