PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01919.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 323aa MW: 35380.7 Da PI: 6.8171

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01919.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.6	3.6e-12	44	70	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yGdrC+++H++ Zmw_sc01919.1.g00040.1.sm.mkhc 44 PGEADCAYYLRTGTCAYGDRCRYNHPR 70 57899********************96 PP
2	zf-CCCH	35.3	1.9e-11	100	125	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ Zmw_sc01919.1.g00040.1.sm.mkhc 100 GEKECSYYVKTGHCKFGATCKFHHPE 125 5789********************96 PP
3	zf-CCCH	39.4	9.9e-13	252	278	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tGtCk+G++Ck++H++ Zmw_sc01919.1.g00040.1.sm.mkhc 252 PGQPECEYYMKTGTCKFGPTCKYHHPQ 278 5789*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.3E-6	43	70	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.169	43	71	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.4E-10	45	70	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.07E-6	47	72	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.6E-6	49	71	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.619	99	126	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.7E-5	100	125	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-9	100	125	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	101	125	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-4	104	124	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.065	251	279	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.0E-7	251	278	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-10	253	278	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.02E-5	255	278	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-4	257	276	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEPQGGEESA GGGGHTGTTG LEEAFQELEV RGEEEAEARL PERPGEADCA YYLRTGTCAY 60 GDRCRYNHPR DRRAAAVNGV GRTIDTVEYP ERPGQPLCEG EKECSYYVKT GHCKFGATCK 120 FHHPELGVAD TSHIYPPGQP STVSSAHPYP HFASLQMGRP PFVPGSYLLG SCPPMMLPST 180 VMAMQGWNPY ISPMNQVTPA GGQQTVQAGH PYGLSHQSPT SSVSYGNLYA PFYPSAGPSS 240 SNKQVHGFPE RPGQPECEYY MKTGTCKFGP TCKYHHPQYF SGPYSNYMLN PLVLPHRPLL 300 RTLSVSLLLP WLDHPLIFGH NTL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967812.1	1e-131	zinc finger CCCH domain-containing protein 5
Swissprot	Q5NAV3	1e-121	C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBL	A0A0A9P980	1e-141	A0A0A9P980_ARUDO; Uncharacterized protein
STRING	Pavir.Ea00915.1.p	1e-136	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2761	38	89

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]