PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01908.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 711aa MW: 74556 Da PI: 10.4596

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01908.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.7e-11	217	260	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ +++L + lP + +K +Ka+i+++A++YIk L+ Zmw_sc01908.1.g00010.1.am.mk 217 TERDRRKKMRTLYSTLHSFLPRL----PEKADKATIVKEATDYIKTLE 260 6*******************6....39**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.344	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-13	212	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.53E-9	214	260	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.1E-12	214	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-6	215	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	217	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.90.1170.20	1.8E-6	678	711	IPR022412	Quinolinate phosphoribosyl transferase, N-terminal
SuperFamily	SSF54675	2.94E-5	679	707	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016763	Molecular Function	transferase activity, transferring pentosyl groups
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MSQQGANLSQ DVEGSLPGGA GSEGTAGSGS SSAKQAVEII SSGWKPASPV INLPQEVQGT 60 HVGDASPGEA TPEAVVLAGT AGFNSSFSSV KLAAEDGGGG SKPASQLEVQ AGDKTAGSKP 120 PSPVVGLVAH AGEPDRPAAV VGAGGSDKGK EKDEPAAEEG AGDIAGSSSK SIKSSSDGDV 180 QGDAKDAPAP AAGGDGSGKR KGKGVAAEAD HALHMWTERD RRKKMRTLYS TLHSFLPRLP 240 EKADKATIVK EATDYIKTLE GTVHMLEKLK LERLKVAQLL GAGSNSSRRA AAPPPPMRHG 300 GGAAPAPAPA NMGTSSWNVP QATAAPPPPP PQVRPLQTWS LPNITVSVAR NEAFFALSAP 360 RQQAAVSKAL FVLDKFCIDV LTLHVSSDQT RCSLTIHTRL NAAAGNVALE LMTAETRYEL 420 AASELARWIN NAQEATRRRK ELRRRFRCVP IISGGIRAVF PRTTLSRLGP DIVAISHKYN 480 ALQVACTIEE PGRSPELREG REYYKQVSRW RGSSGTPRWI PFTSLSRTPN GALAASDRHT 540 AHGSSMLDRV RAGIPQLTAA ISTKVPAARQ NERASFSHSF VFLETQAATL HTPTAPWSSC 600 RAHRPSHLLS VLRLHLSRLV PPASLPSRRS LSRPNSAKQI RGGTLFREAR MAGTSAPAAS 660 ADASANGSHA AAAAQVGAPT NPMATALLTD QYQFSMAYAY WKAGKHADRA V

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MSQQGANLSQ DVEGSLPGGA GSEGTAGSGS SSAKQAVEII SSGWKPASPV INLPQEVQGT  60
HVGDASPGEA TPEAVVLAGT AGFNSSFSSV KLAAEDGGGG SKPASQLEVQ AGDKTAGSKP  120
PSPVVGLVAH AGEPDRPAAV VGAGGSDKGK EKDEPAAEEG AGDIAGSSSK SIKSSSDGDV  180
QGDAKDAPAP AAGGDGSGKR KGKGVAAEAD HALHMWTERD RRKKMRTLYS TLHSFLPRLP  240
EKADKATIVK EATDYIKTLE GTVHMLEKLK LERLKVAQLL GAGSNSSRRA AAPPPPMRHG  300
GGAAPAPAPA NMGTSSWNVP QATAAPPPPP PQVRPLQTWS LPNITVSVAR NEAFFALSAP  360
RQQAAVSKAL FVLDKFCIDV LTLHVSSDQT RCSLTIHTRL NAAAGNVALE LMTAETRYEL  420
AASELARWIN NAQEATRRRK ELRRRFRCVP IISGGIRAVF PRTTLSRLGP DIVAISHKYN  480
ALQVACTIEE PGRSPELREG REYYKQVSRW RGSSGTPRWI PFTSLSRTPN GALAASDRHT  540
AHGSSMLDRV RAGIPQLTAA ISTKVPAARQ NERASFSHSF VFLETQAATL HTPTAPWSSC  600
RAHRPSHLLS VLRLHLSRLV PPASLPSRRS LSRPNSAKQI RGGTLFREAR MAGTSAPAAS  660
ADASANGSHA AAAAQVGAPT NPMATALLTD QYQFSMAYAY WKAGKHADRA V

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91