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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01905.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 33412.6 Da PI: 4.3427 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 80 | 129 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + r++lg++ +ae Aa+a++aa++ ++g Zmw_sc01905.1.g00070.1.sm.mk 80 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTYSSAEAAARAYDAAARDIRG 129 69*******.**********75....44**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.18E-18 | 79 | 139 | No hit | No description |
PROSITE profile | PS51032 | 24.698 | 80 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 80 | 138 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-38 | 80 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-12 | 80 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MCGGAILAEL IPSAPARRAK RQQRKADDFE EAFRDFDDDS EDDAEMAKAE AEEVAESMPF 60 VVRAAPSANR HGGGRRKPAQ YRGVRRRPWG KWAAEIRDPV KGVRVWLGTY SSAEAAARAY 120 DAAARDIRGS RAKLNFPETS SSASDSAPAG RKRARAVPAA PVIDLVFDEV EEDHAASVKH 180 EAEASQGSDE SGHALLPDFS WQGVLALDFA VAQPALDVEP AGAGKRMRTE ETPAERAGDE 240 EASPASSESD ALFDAFLFCD QYPFFGGGGG GAYESLDSLF SADAVQGGSA ADEGMGLWSF 300 DDGCLLVEDN LSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 77 | 142 | 2 | 68 | ATERF1 |
3gcc_A | 5e-20 | 77 | 142 | 2 | 68 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 86 | RRKPAQYRGVRRR |
2 | 149 | 155 | GRKRARA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797880.1 | 3e-94 | ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A2T7CGR1 | 2e-93 | A0A2T7CGR1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia04158.1.p | 3e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 |