PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01905.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35681.4 Da    PI: 4.9602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01905.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18109158255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Zmw_sc01905.1.g00050.1.am.mkhc 109 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 158
                                     69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-31108166IPR001471AP2/ERF domain
PROSITE profilePS5103223.433109166IPR001471AP2/ERF domain
PfamPF008473.2E-11109158IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21109167IPR016177DNA-binding domain
CDDcd000181.30E-28109168No hitNo description
SMARTSM003802.3E-35109172IPR001471AP2/ERF domain
PRINTSPR003672.8E-11110121IPR001471AP2/ERF domain
PRINTSPR003672.8E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCGGAILAEL IPPTRRAASR PVTAGGNLWP ASSENGGRGR DNKKHVAEID DFEAAFEEFD  60
DDFDEVEEDG DYGYDGSRAR PFVFASKPAF SSAHDGRAAR QRKRGSRRHF RGIRQRPWGK  120
WAAEIRDPHK GTRVWLGTFN TAEDAARAYD VEARRLRGSE AKVNFPAAGA RPRRAKARPA  180
PKAQPPPAAA QLASLGGQKK RQEELVAEPE TMMAAFNMDN LLDLTFPAAP PVTASSFTDS  240
AGSESRAPVK KQRTDDSSDG SATLELTEGL EFDPFMFFQL PYMDGGYESI DSLFAGGEAG  300
QDVNTVNSDV NGAGLWSFDE FPIDGAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21108166160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-22108166463ATERF1
3gcc_A9e-22108166463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791485.11e-117ethylene-responsive transcription factor 1-like
RefseqXP_025791486.11e-117ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9VK361e-129A0A0A9VK36_ARUDO; Uncharacterized protein
STRINGPavir.Ib00526.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040