PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01896.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23981.5 Da    PI: 10.575
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01896.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.91.7e-151152344
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                  ++n+  r  tf kR +g++KK +ELS LC+++++v++++++ 
  Zmw_sc01896.1.g00020.1.am.mk 11 VSNDAGRRATFNKRCHGLMKKTSELSSLCGVKACVLVYGQNE 52
                                  589999*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.512151IPR002100Transcription factor, MADS-box
CDDcd002664.08E-21260No hitNo description
SuperFamilySSF554553.27E-19297IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-141251IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRRKLNLHW VSNDAGRRAT FNKRCHGLMK KTSELSSLCG VKACVLVYGQ NEVFPHVWPS  60
VGEARDFLLT SYKATAELHQ WNKKVSHEDF LKKRIKKLQG QMRKWDRESQ GRETSILLHE  120
STVGHRTGLV GVTPVDVIRL REVVERKTKA VQERLKRLGV QPEKQLPPWS STMQMHGLAP  180
LEEPQRNQQD MLTGCSSSAD PSTPSTSGSG GSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971693.12e-44agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202