PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01882.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 454aa MW: 48869.8 Da PI: 9.8146 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 85.8 | 5.7e-27 | 169 | 263 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ +++sql+eK+rrLK+Kf+ +++++++g +p+ + Zmw_sc01882.1.g00020.1.am.mk 169 NFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRSQLSEKLRRLKNKFRSMSARVANGLDPARLA 248 79*******************.556878888************************************************** PP DUF573 83 ehdqkifelskkiWg 97 +hd+++++l++++W+ Zmw_sc01882.1.g00020.1.am.mk 249 PHDRDVLHLCSRLWD 263 **************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-24 | 170 | 263 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 454 aa Download sequence Send to blast |
MEAGCRWEGV MSRIRNPRIP AEPTKPPRCD PSTRATQLYA IGLHHPYRVP SPSSPNPQAA 60 ATPSGHAARD PIHPPASHAT SPSRLVLVAP RGLASPARSP GSVRAMASHQ QTLPVPVPVS 120 PNPTAPADPT PPSSGARKLP IKRRSPRPST SSPRSSGSNQ QQQEQPPFNF QRIWSESDEL 180 RFLQGLLGCG AQGLVFPRDL NVFYDRFSES MPQPYTRSQL SEKLRRLKNK FRSMSARVAN 240 GLDPARLAPH DRDVLHLCSR LWDPANAATS PFAAGTGTGA SGNKRRRANP RGTPLLAPDA 300 SGDSNSHDFN GISFPGGSNG EDMFFIEQES GHLGNHEGAP LVADSTFSGI ALEQSQTVAS 360 VPIENHGIVN EMNGNHKLVV PCSNEQCMAN AVLDVFDECL REAKANGNLS SGNAQGSADG 420 SELAKRWRAQ RIDELLVLSR RLRLLVEDAT VAGR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464013.1 | 1e-162 | probable transcription factor At3g04930 | ||||
Refseq | XP_021307245.1 | 1e-162 | probable transcription factor At3g04930 | ||||
TrEMBL | B6T7U5 | 1e-163 | B6T7U5_MAIZE; Uncharacterized protein | ||||
STRING | Sb01g010570.1 | 1e-162 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 |