PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01872.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 576aa MW: 64931.6 Da PI: 10.2835

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01872.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.7	1.9e-13	16	67	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q+++Le+++ +yp+ +e+ + A+ +gLt +qV++WF+ rR ke++ Zmw_sc01872.1.g00020.1.am.mkhc 16 KKSPLQIQRLEKFYTDVQYPKPAEMVQYAAFVGLTYNQVRIWFKERRRKERR 67 56899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.815	8	68	IPR001356	Homeobox domain
SMART	SM00389	3.2E-13	10	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-13	12	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.1E-13	15	73	IPR009057	Homeodomain-like
CDD	cd00086	3.22E-8	15	58	No hit	No description
Pfam	PF00046	8.1E-11	16	67	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
TMVTSLGANR ANGGTKKSPL QIQRLEKFYT DVQYPKPAEM VQYAAFVGLT YNQVRIWFKE 60 RRRKERREME TVGAHMERQL SSRASGPSST SSCTQAPMSE SSSISIGEEP TVRPQALFPK 120 DYILRKIFRK DGPPLGSEFD PLPQSALANI RDVTSHHSSQ NQRVVKKRKA MEYSNQRSKK 180 PNEVTVPVRK HGIGKGLMTV WHAMYSHNVE CQGHSSFIDE TGCLRSLRPF DECDGFEDQD 240 NGKRTQMKSQ NKGMARKKVD KRSKAPLNKR KVPCSRVFVP EQHSILDCHL SVDVSESSEV 300 QTEHVALVDD EELELSELQA GPNPLQCSAH LSSSGRHGCP LCKDLLAKFP PRSVKMKQAL 360 SMKPWGSSPN MVKKLFQIVR FVYTHFGSID VHPFTFDEFA QAFHDKEKNQ MVKYGLRPRT 420 LKGELFTLLS KKGSGGLKVT ELAKSPEEPQ KVSLNVSKAQ PRPSGMMTQD IVGSTLSLRK 480 MVTGRWLTHH REPEVVHEVP NYKVLPSQLQ ALKAGIHAIE ASMPEVAFVG SWKKSAHKLW 540 VKRLRRTSSL PELLKVLVDF VGAVNKDWLM VLQEPN

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

TMVTSLGANR ANGGTKKSPL QIQRLEKFYT DVQYPKPAEM VQYAAFVGLT YNQVRIWFKE  60
RRRKERREME TVGAHMERQL SSRASGPSST SSCTQAPMSE SSSISIGEEP TVRPQALFPK  120
DYILRKIFRK DGPPLGSEFD PLPQSALANI RDVTSHHSSQ NQRVVKKRKA MEYSNQRSKK  180
PNEVTVPVRK HGIGKGLMTV WHAMYSHNVE CQGHSSFIDE TGCLRSLRPF DECDGFEDQD  240
NGKRTQMKSQ NKGMARKKVD KRSKAPLNKR KVPCSRVFVP EQHSILDCHL SVDVSESSEV  300
QTEHVALVDD EELELSELQA GPNPLQCSAH LSSSGRHGCP LCKDLLAKFP PRSVKMKQAL  360
SMKPWGSSPN MVKKLFQIVR FVYTHFGSID VHPFTFDEFA QAFHDKEKNQ MVKYGLRPRT  420
LKGELFTLLS KKGSGGLKVT ELAKSPEEPQ KVSLNVSKAQ PRPSGMMTQD IVGSTLSLRK  480
MVTGRWLTHH REPEVVHEVP NYKVLPSQLQ ALKAGIHAIE ASMPEVAFVG SWKKSAHKLW  540
VKRLRRTSSL PELLKVLVDF VGAVNKDWLM VLQEPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	67	RRRKERRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793779.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_025793780.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A2S3ISD5	0.0	A0A2S3ISD5_9POAL; Uncharacterized protein
TrEMBL	A0A2S3ITF1	0.0	A0A2S3ITF1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CF08	0.0	A0A2T7CF08_9POAL; Uncharacterized protein
STRING	Pavir.Ib01030.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50