PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zmw_sc01866.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 384aa MW: 42391.4 Da PI: 7.8069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01866.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	205	224	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Zmw_sc01866.1.g00140.1.am.mk 205 FICHVCSKTFNRYNNMQMHM 224 89*****************9 PP
2	zf-C2H2	12.2	0.00054	292	314	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Zmw_sc01866.1.g00140.1.am.mk 292 FGCRRCGKPFAVKGDWRTHEKNC 314 56*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.66E-5	196	228	No hit	No description
PROSITE profile	PS50157	10.138	205	232	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-4	205	224	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	207	227	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MESAAGFGVQ FFELLKPSSS PPSSFSSLTT SSSLSTPSID RSVGGSNGGL DTSLCLPLLD 60 RLEERATSPE SDHGRNGNHH IKQELLSNDT TAPNGRSEEA DVELNIGLPA IGGYSSSEDA 120 PMDEEDEEEN IEDSEEDEKP IRQCDEKCKA EGGDDQRARI EMVEGSSDCL RVGGEASMIK 180 GIFTSRGRRF WIPTPAQILV GPVQFICHVC SKTFNRYNNM QMHMWGHGRE YRKGPESLKQ 240 GTQAATVALL KLPCYCCSPG CRNNVSHPRA RPLKDFRTLQ THYKRKHGAK HFGCRRCGKP 300 FAVKGDWRTH EKNCGKRWFC ACGSDFKHKR SLNDHVRSFG GGHLPVAPDH QQVTAAAAVP 360 PQPSRQRIIR FDQAAAPWNR NLAG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MESAAGFGVQ FFELLKPSSS PPSSFSSLTT SSSLSTPSID RSVGGSNGGL DTSLCLPLLD  60
RLEERATSPE SDHGRNGNHH IKQELLSNDT TAPNGRSEEA DVELNIGLPA IGGYSSSEDA  120
PMDEEDEEEN IEDSEEDEKP IRQCDEKCKA EGGDDQRARI EMVEGSSDCL RVGGEASMIK  180
GIFTSRGRRF WIPTPAQILV GPVQFICHVC SKTFNRYNNM QMHMWGHGRE YRKGPESLKQ  240
GTQAATVALL KLPCYCCSPG CRNNVSHPRA RPLKDFRTLQ THYKRKHGAK HFGCRRCGKP  300
FAVKGDWRTH EKNCGKRWFC ACGSDFKHKR SLNDHVRSFG GGHLPVAPDH QQVTAAAAVP  360
PQPSRQRIIR FDQAAAPWNR NLAG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961925.1	1e-159	protein TRANSPARENT TESTA 1
Swissprot	Q8W030	6e-94	ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBL	K3Z6X6	1e-158	K3Z6X6_SETIT; Uncharacterized protein
STRING	Si022296m	1e-158	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]