PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01866.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 384aa MW: 42391.4 Da PI: 7.8069 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.6e-05 | 205 | 224 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Zmw_sc01866.1.g00140.1.am.mk 205 FICHVCSKTFNRYNNMQMHM 224 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00054 | 292 | 314 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Zmw_sc01866.1.g00140.1.am.mk 292 FGCRRCGKPFAVKGDWRTHEKNC 314 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.66E-5 | 196 | 228 | No hit | No description |
PROSITE profile | PS50157 | 10.138 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 205 | 224 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MESAAGFGVQ FFELLKPSSS PPSSFSSLTT SSSLSTPSID RSVGGSNGGL DTSLCLPLLD 60 RLEERATSPE SDHGRNGNHH IKQELLSNDT TAPNGRSEEA DVELNIGLPA IGGYSSSEDA 120 PMDEEDEEEN IEDSEEDEKP IRQCDEKCKA EGGDDQRARI EMVEGSSDCL RVGGEASMIK 180 GIFTSRGRRF WIPTPAQILV GPVQFICHVC SKTFNRYNNM QMHMWGHGRE YRKGPESLKQ 240 GTQAATVALL KLPCYCCSPG CRNNVSHPRA RPLKDFRTLQ THYKRKHGAK HFGCRRCGKP 300 FAVKGDWRTH EKNCGKRWFC ACGSDFKHKR SLNDHVRSFG GGHLPVAPDH QQVTAAAAVP 360 PQPSRQRIIR FDQAAAPWNR NLAG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961925.1 | 1e-159 | protein TRANSPARENT TESTA 1 | ||||
Swissprot | Q8W030 | 6e-94 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | K3Z6X6 | 1e-158 | K3Z6X6_SETIT; Uncharacterized protein | ||||
STRING | Si022296m | 1e-158 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Publications ? help Back to Top | |||
---|---|---|---|
|