PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01862.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 477aa MW: 49450.2 Da PI: 8.2675

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01862.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.5	7.7e-30	221	280	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+ Zmw_sc01862.1.g00060.1.sm.mkhc 221 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCAEDKTILITTYEGTHNHQ 280 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-31	208	282	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-27	214	282	IPR003657	WRKY domain
PROSITE profile	PS50811	27.864	216	282	IPR003657	WRKY domain
SMART	SM00774	4.3E-35	221	281	IPR003657	WRKY domain
Pfam	PF03106	4.5E-26	222	280	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MQVGSALPIV FESFQSPQRA ASIKLQEDSN RLEAARAEMG EVKEENERLK TLLSRIVSDY 60 QSLRMHYLDV VKVREQSGKA KLPAEPAPVA DVDDLVSLSL GTRSNGGARP KGHERSSSSS 120 GTADDSQLSL GLGFGRGNGP STDDDKASGA SAGPVLNLSS GSSSAEDTTK ISEADASRPG 180 ETRKSPSAGA GAGDGSADDE VQQQAKRIRV SVRVKCDTPT MNDGCQWRKY GQKISKGNPC 240 PRAYYRCTVA PNCPVRKQVQ RCAEDKTILI TTYEGTHNHQ LPPAATAMAY TTSAAAAMLT 300 TGSTSSTPAA SLARHHLPFA TPAGLFGPTT MVSTAASCPT ITLDLTAPAT PAHALMESSP 360 YAAGAYESKA LPAAWSSGLP AYGGNLLSYY AAKSSPAMGN LFGGLGLPSR PDHLFGQSSF 420 LQRSTSLGGG QSAVAPVVTD TLAKAITSDP SFQSALAAMI TSYMGRGAGS GGESAHK

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MQVGSALPIV FESFQSPQRA ASIKLQEDSN RLEAARAEMG EVKEENERLK TLLSRIVSDY  60
QSLRMHYLDV VKVREQSGKA KLPAEPAPVA DVDDLVSLSL GTRSNGGARP KGHERSSSSS  120
GTADDSQLSL GLGFGRGNGP STDDDKASGA SAGPVLNLSS GSSSAEDTTK ISEADASRPG  180
ETRKSPSAGA GAGDGSADDE VQQQAKRIRV SVRVKCDTPT MNDGCQWRKY GQKISKGNPC  240
PRAYYRCTVA PNCPVRKQVQ RCAEDKTILI TTYEGTHNHQ LPPAATAMAY TTSAAAAMLT  300
TGSTSSTPAA SLARHHLPFA TPAGLFGPTT MVSTAASCPT ITLDLTAPAT PAHALMESSP  360
YAAGAYESKA LPAAWSSGLP AYGGNLLSYY AAKSSPAMGN LFGGLGLPSR PDHLFGQSSF  420
LQRSTSLGGG QSAVAPVVTD TLAKAITSDP SFQSALAAMI TSYMGRGAGS GGESAHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-22	209	284	2	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457211.1	0.0	probable WRKY transcription factor 72
TrEMBL	C5XM16	0.0	C5XM16_SORBI; Uncharacterized protein
STRING	Sb03g003370.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12081	29	38