PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01855.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 449aa    MW: 48267.1 Da    PI: 7.8647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01855.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05279302123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   y+C++Cg+sF ++  L  Hi+  H
  Zmw_sc01855.1.g00160.1.am.mk 279 YVCTICGRSFATPQALGGHISAgH 302
                                   9***************99998777 PP
2zf-C2H213.40.00023318340123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kCp Cg++F++ + L  H+ +H
  Zmw_sc01855.1.g00160.1.am.mk 318 HKCPVCGEVFPSGMALGGHMGKH 340
                                   79**************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.7E-4265329IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576671.96E-5277340No hitNo description
PfamPF139127.4E-6278297IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93279307IPR007087Zinc finger, C2H2
SMARTSM003550.052279302IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281302IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642318345IPR007087Zinc finger, C2H2
SMARTSM003550.011318340IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-9318342IPR007087Zinc finger, C2H2
PROSITE patternPS000280320340IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MTREGYLATL RRRSSGFSRG ASEYRGVACG PAPPERPVGS QDWSFRRQEI HLCGDIRSTE  60
SVPECPVPID HLPAEEATPP LQLKPEPEEA LLDADDVDHV IAAILAALCM DTAVRRLRGP  120
VPRPPCARAP TAYCLRSGST QYWAGPTGFQ KELSSPSARR SHNDKTYHPS PMAPPSPRSS  180
PTPATSDRDS RTISDACCSA VGAVDAATSV PEPRRRPLVR PTPVAFAESN PSPASCVESR  240
SPPSEPKPSN EVFVHEQQPR EVDDHEHQPA QDPDPPKRYV CTICGRSFAT PQALGGHISA  300
GHNYRQRKAA DPADRKEHKC PVCGEVFPSG MALGGHMGKH RDRPQTAGKK SKKQRVEPPP  360
AAPVAPPAPL ASPAAAGTMA EVTLPQETQA GQPSHSPPEV NGTRLFGVYM SPNVNIIRLF  420
GVYMSPHVLI EAPAEQNPDH GKDRSSNGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213220RRRPLVRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3463434