PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01848.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 1169aa    MW: 127443 Da    PI: 10.8003
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01848.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.28.9e-1055909593374
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   + Ll+c +  ++ d   a a L +++  +s dgdp +R+a+yf  ALa+rla  +    ++    + +   s+e +  +k+
  Zmw_sc01848.1.g00100.1.am.mk 590 QSLLACSRTATA-DPGHAAAELVKVRAAVSDDGDPAERVAFYFGDALARRLAYDGRAPPSTGVDCRFA---SDELTLCYKT 666
                                   789999997666.666677778889***************************9444433333333333...899999**** PP

                          GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleet 161
                                   +++++P+ kf+hltaNqaIlea+  ++++Hi+Df+i +G+QW+ LlqaLa+Rpeg+p ++RiTgv sp  g   + +l +t
  Zmw_sc01848.1.g00100.1.am.mk 667 LNDACPYSKFAHLTANQAILEATGAATKIHIVDFGIVMGIQWAVLLQALATRPEGKPsRVRITGVPSPFLGwkPAASLAAT 747
                                   *****************************************************887769********9888999******* PP

                          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                    +rL++fA+ +gv+fef + + + +++l+ ++++++++E++a+n+++ql++ll +s ++ +   +vL+l ksl+P vv++ 
  Zmw_sc01848.1.g00100.1.am.mk 748 SSRLRDFAKLVGVDFEFVP-LLRPVHELDRSDFSFEHDETVAINFMFQLYHLLGDSDETVQ---RVLRLAKSLNPSVVTLG 824
                                   *******************.599******************************77776666...9**************** PP

                          GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleea 322
                                   e e+++n+  F++rf++al yy+++f+sl++ +pr+s er+ vEr ++g++i+ ++   eg er+ r+   ++W+  +e +
  Zmw_sc01848.1.g00100.1.am.mk 825 EFEVSLNRVGFVDRFANALCYYMSVFESLDVAMPRDSPERVRVERCMFGERIRRAIGpDEGVERTDRMADSKEWQTLMEWC 905
                                   ********************************************************846999******************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                   GF+pv+ls++a++qa+lll +++ +  y++ e++ +++ l W++rpL++vSaWr
  Zmw_sc01848.1.g00100.1.am.mk 906 GFEPVQLSNYAMSQADLLLWNYDsKYKYSLIEQQPAFLsLAWEKRPLITVSAWR 959
                                   ***********************7777999999999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.258562937IPR005202Transcription factor GRAS
PfamPF035143.1E-102590959IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1169 aa     Download sequence    Send to blast
MIASPPRSVG SFCLLNHVRR NCDSRDNQHL PIAMHPPINY RLPVRCSSLE GITVLALRIS  60
RQVKRRNDLR ADRAGDVAGR PAPAGRRFGR GRATTVGGTR TRGGPGPVAT PRLVLLAALR  120
WRPIARPQLR LVRNPGGRNG ARKRQRAARL FVRSRHYEHK VGFGHSRLQP GTLEGRPVKA  180
PYGRDERRCP VPAVRSLPSR TQARRAGGEQ RRKRTVTLLA AHRGSGGRQR QRPRPRNRAA  240
SSWPAPGAHL ECAVWECAAS ARQWHRGTLA GTLGMKWSRC SAWQCGPKAR GWFGRSSVNV  300
QGMSWKLITV LIDASPFHYF SVLGPSSDYG DIKKILRGQT DLANRSSSSH FTVVAGEHRG  360
SKAQATAFPP FGSTPQNHIA EFLGRVPSPP FRDSAPGDGG GGRMAYMCAD SGNLMAIAQQ  420
VIQQQQQQQH HQHHIPMPPP PMPTPMPPRQ VPPVAGLPHG QIPAPSYGGG TWPHSEHFFA  480
DAFVGAPPAA DAVFSDLPGA ADFDSDGWME SLIADTPVFA DSDLDRLIFT TPPPPVPVPA  540
PAVEPVEAAT AAHQVKAVVP SSVPQPSTAT PAASSSPSSL DASCSAPILQ SLLACSRTAT  600
ADPGHAAAEL VKVRAAVSDD GDPAERVAFY FGDALARRLA YDGRAPPSTG VDCRFASDEL  660
TLCYKTLNDA CPYSKFAHLT ANQAILEATG AATKIHIVDF GIVMGIQWAV LLQALATRPE  720
GKPSRVRITG VPSPFLGWKP AASLAATSSR LRDFAKLVGV DFEFVPLLRP VHELDRSDFS  780
FEHDETVAIN FMFQLYHLLG DSDETVQRVL RLAKSLNPSV VTLGEFEVSL NRVGFVDRFA  840
NALCYYMSVF ESLDVAMPRD SPERVRVERC MFGERIRRAI GPDEGVERTD RMADSKEWQT  900
LMEWCGFEPV QLSNYAMSQA DLLLWNYDSK YKYSLIEQQP AFLSLAWEKR PLITVSAWRT  960
VRSSATAVPR IRTSTQPKPT APLLARRVET LTCCTRRAGA RTRRHAASRP WRPPSRTCRP  1020
ARRATATEAG PRQYGTPART SGYKDLVPPD RWEHVAVRAV SLTHSSSSAG GGLGFALGRF  1080
RGGVSVVVAA PGFDIRRRRS VSATSASSAP LPGEQGVGME QPKQQPPQVP RQDASRGEEE  1140
NNVKQHDAHG STRAIQVRAR SLALTFVGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.05859591375GRAS family transcription factor containing protein, expressed
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146ARKRQRA
2227237RQRQRPRPRNR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748