PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01847.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 652aa    MW: 70101.9 Da    PI: 7.2956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01847.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32222278259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDgynWrKYGqK+vkgse+prsY++Ct+++Cp+kkkve+s+ d++++ei+Y+g+Hnh 
  Zmw_sc01847.1.g00210.1.am.mk 222 DDGYNWRKYGQKQVKGSENPRSYFKCTFPNCPTKKKVETSQ-DGQITEIVYKGTHNHA 278
                                   8***************************************9.***************7 PP
2WRKY105.13.8e-33368426159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Zmw_sc01847.1.g00210.1.am.mk 368 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDLRAVITTYEGKHNHD 426
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28212280IPR003657WRKY domain
PROSITE profilePS5081122.412216280IPR003657WRKY domain
SuperFamilySSF1182901.07E-24216280IPR003657WRKY domain
SMARTSM007741.6E-35221279IPR003657WRKY domain
PfamPF031068.6E-25222277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-37353428IPR003657WRKY domain
SuperFamilySSF1182902.35E-29360428IPR003657WRKY domain
PROSITE profilePS5081138.526363428IPR003657WRKY domain
SMARTSM007741.4E-38368427IPR003657WRKY domain
PfamPF031061.5E-25369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MTTSSSGSIE VPANSKPGAF SSASTSFTDM TGGSAAASGA SGYEAMTPPS LPLSPPLVSP  60
SSFFNIPGGL NPADFLDSPV LLTSSLFPSP TVGAFASQQY SWMPSQGAEE GGNNREEQRQ  120
SSSYPDFSFQ PAAPTSEEAV RTTTAFQPPI PLASLGEEAY SSQQQAPWGF QHQPGMDAGA  180
AQAAFGGASF QATSSDASVM APHVQGSGGG YSQTQSQRRS SDDGYNWRKY GQKQVKGSEN  240
PRSYFKCTFP NCPTKKKVET SQDGQITEIV YKGTHNHAKP QNTRRKSSAA AQLMQSGDAS  300
EHSFGGTPEN SASFGDDDNG GGDDFDEDEP DSKRWRRESE AEGISMAGNR TVREPRVVVQ  360
TMSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTTTGCP VRKHVERASH DLRAVITTYE  420
GKHNHDVPAP RGSAAALYRP VPPPPDNGAG SSSHHYLAAT YQSSGAGQQY APGFNGQGSS  480
FGLQSAAGGG FAFSGFDNPM RSYMSQHHQQ QRQNDAMHAS RAKEEPREDM PLDSGSKNIA  540
FWHAREVPRW MGASAVKRGM PDWIKRPDKQ RPLLVSAPDD VDKVRASGYR HQLLRSRGCV  600
KRTPRLSLRQ QPREGVVESG ASGPAVQILD VIKNGEAIEG ASGHVKTDDI AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35207429378Probable WRKY transcription factor 4
2lex_A1e-35207429378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970421.30.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5WCJ00.0A0A1E5WCJ0_9POAL; Putative WRKY transcription factor 33
STRINGSi000906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]