PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01818.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 548aa MW: 56803.2 Da PI: 8.3984

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01818.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.1	1.6e-37	16	72	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ ++ Zmw_sc01818.1.g00200.1.am.mk 16 GEPCPRCESRETKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSA 72 578**************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	16	66	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	17	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	17	70	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
PEPATVKVEE APATAGEPCP RCESRETKFC YYNNYNTSQP RHFCKSCRRY WTKGGSLRNV 60 PVGGGTRKSS SASPASPKNP KRSKNSKRRR VAPSPDPAPS TDDAVASNAG VGDREPTPAP 120 LTEDAAAGNV EDRAHVAPPA AEQGFKSTSV ARGLGVTDAG GGGGKEPPDT GPFEWPSSCG 180 DLGSFWGAGV FTDTDPALPV EFDPSGLSRR GHAPPMTQPG ALLRDRVRQL IGNFRLPRTY 240 DGRAGVAWGS TARWSVPPSP GAFGWTSTSW CFELRAAADA DGSLIPTATR ALYAASGSVV 300 GCAYVPLRVR RPLRSRSSPA PASGVIMLAE KQAAMEKLEW EANVSSAKVE ELQVDGNCNS 360 NMDVPKTCGT RSSRHRQHLA FLYEPATASR YASAGTASAK DSHTVSPYNS IDWSLSPVPL 420 VARTTPAASF AALPINQAAP AASPEPSGSA SPWSAPSKAP SGAPTAMEME SPSLAPAKAP 480 ALGRKANAAG APQEDSPTAA PALATLGTEW PEESPGADDA SDAASATPTR RSLAAAALLA 540 AVWALAAL

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

PEPATVKVEE APATAGEPCP RCESRETKFC YYNNYNTSQP RHFCKSCRRY WTKGGSLRNV  60
PVGGGTRKSS SASPASPKNP KRSKNSKRRR VAPSPDPAPS TDDAVASNAG VGDREPTPAP  120
LTEDAAAGNV EDRAHVAPPA AEQGFKSTSV ARGLGVTDAG GGGGKEPPDT GPFEWPSSCG  180
DLGSFWGAGV FTDTDPALPV EFDPSGLSRR GHAPPMTQPG ALLRDRVRQL IGNFRLPRTY  240
DGRAGVAWGS TARWSVPPSP GAFGWTSTSW CFELRAAADA DGSLIPTATR ALYAASGSVV  300
GCAYVPLRVR RPLRSRSSPA PASGVIMLAE KQAAMEKLEW EANVSSAKVE ELQVDGNCNS  360
NMDVPKTCGT RSSRHRQHLA FLYEPATASR YASAGTASAK DSHTVSPYNS IDWSLSPVPL  420
VARTTPAASF AALPINQAAP AASPEPSGSA SPWSAPSKAP SGAPTAMEME SPSLAPAKAP  480
ALGRKANAAG APQEDSPTAA PALATLGTEW PEESPGADDA SDAASATPTR RSLAAAALLA  540
AVWALAAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	90	KRRRV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367