PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01811.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 450aa MW: 48074.3 Da PI: 11.0185 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.8 | 2.2e-21 | 193 | 282 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt++e+laLiea+r+++e lr+g+l++++W++v++++ + ++ +qC++k+e+l+kry++++ ++ +r+++ Zmw_sc01811.1.g00080.1.am.mk 193 CWTHEETLALIEAYRDRWEMLRKGNLRAADWDDVADAVtsrcgrFPTATPKTGVQCRHKIEKLRKRYRAERGRSAGRSKG- 272 8*************************************998888888899*************************98443. PP trihelix 76 sstcpyfdqle 86 ++p+++ l+ Zmw_sc01811.1.g00080.1.am.mk 273 -PKWPFYQLLH 282 .47****9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-21 | 192 | 283 | No hit | No description |
PROSITE profile | PS50090 | 6.017 | 194 | 256 | IPR017877 | Myb-like domain |
SMART | SM00595 | 1.4E-5 | 201 | 289 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
LLPPAAGFPI RRKKSGRGRP RPTGEKARRG GHHHPPRPDT ALGHRGTDSA QCGAASSSSL 60 PSAAALRLHD KPLGGTTAPP PHAAAQRWCR SPAGHFTARP TPAAHHRTAP PLPPPPPPYY 120 DRFRSSSVPH LHHQTLDAFA AADRPSRDDA VSSPDLPPLA APVAAAAAAA AAAASSGGGG 180 LGAGSGRRLP PPCWTHEETL ALIEAYRDRW EMLRKGNLRA ADWDDVADAV TSRCGRFPTA 240 TPKTGVQCRH KIEKLRKRYR AERGRSAGRS KGPKWPFYQL LHDLAGNGAP DPSPNAIVKI 300 KTKGPAPPAS PPSPVSSPSS EEEAVRSRSL HGLISNGGAG SGLRFTIPKA SRTRPSSAAA 360 TRPDKSSNQG DTESEAMSEV AAALRAVGEG FVRMEERRLV LSIQMEKERM EFEMKRTQTM 420 LDAQQLFLEA FLGKQHLPHK KARVSPAMED |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659928.1 | 1e-153 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A1X7YE92 | 1e-151 | A0A1X7YE92_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A3L6DCX4 | 1e-151 | A0A3L6DCX4_MAIZE; Trihelix transcription factor ASIL2 | ||||
STRING | GRMZM2G428470_P01 | 1e-152 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |