PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01810.1.g00200.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 745aa    MW: 80139.1 Da    PI: 6.6494
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01810.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07305325526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C++f++ G C++Gd C +aHg
  Zmw_sc01810.1.g00200.1.sm.mk 305 PCPDFRK-GVCRRGDMCEYAHG 325
                                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.2E-1842166IPR020683Ankyrin repeat-containing domain
CDDcd002045.85E-1046165No hitNo description
PROSITE profilePS5029717.13187162IPR020683Ankyrin repeat-containing domain
SMARTSM002480.187117IPR002110Ankyrin repeat
SuperFamilySSF484036.53E-1687165IPR020683Ankyrin repeat-containing domain
PfamPF127966.7E-1187156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008813.01122157IPR002110Ankyrin repeat
SMARTSM002480.0039122154IPR002110Ankyrin repeat
PRINTSPR014153.5E-5123138IPR002110Ankyrin repeat
PRINTSPR014153.5E-5141155IPR002110Ankyrin repeat
SMARTSM003561.1E-5300326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4304327IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4305325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375305327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4333363IPR000571Zinc finger, CCCH-type
SMARTSM0035625335358IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052335359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MPISASPAAS FDGGAETVAA PRKNTAAANP VAERVKRLTI DTDDAFTSLL ELAADDDAEG  60
LRRALERAPP AAADEAGLWY GRRKVLEHRT PLMVAATYGS LAALRLLLSL PSVDVNNRCS  120
PDGTTALHCA AYGGSRTAVE AVKLLLAAGA DPDAKDDSGR RPADVISVPP KMFDAKFALQ  180
DILGCPKSEH GVLRVVTRST NSISSPVSSP TAEDAQSPSA ALMMTTKFAD LPRVATSEKK  240
EYPVDPSLPD IKNSIYASDE FRMYSFKIRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH  300
YSCVPCPDFR KGVCRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTNCNRR VCFFAHTTDE  360
LRPLYVSTGS AVPSPRASAT AAMEMAAAMG MMPGSPSSAS AVMSPFTPPM SPSGNGMSSS  420
LGWQQPNVPT LHLPGSGLQS SRLRTSLSAR DMPADDYSLM QDPDSQLMND HFSRLGPSAG  480
NHSARTKSLN PSNLDDLFSA EMVSSPRYNN TDQGAMFSPS HKAAILNQFQ QQQQALLSPI  540
NTGVFSPKAV DNHQVPSHSS LLQASFGLSS PGRMSPQCAE SGSPMNSLLA AALIQREKQQ  600
QQQTMRSLSS RDLGPSAARS SALVGSPLSS SWSRWGSPSG TPDWVIDGEE LVKLRRSSSF  660
ELRSGGDDPD LSWVHTLVKE SPPEKQVTIA ETMNCVGPSP IMPPSMNNEE VSGLNTQLDG  720
HDQAAVIGAL LEEMQLDQKI GSLAT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794600.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2T7C2E70.0A0A2T7C2E7_9POAL; Uncharacterized protein
STRINGSi034386m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]