PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01783.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 114aa MW: 12432.1 Da PI: 11.1724

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01783.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.2e-17	59	108	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p + r+r++lg++ t+ Aa+a++ a +l+g Zmw_sc01783.1.g00180.1.am.mk 59 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 108 6****99.******732...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.5E-27	58	114	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-19	59	114	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.549	59	114	IPR001471	AP2/ERF domain
SMART	SM00380	2.5E-28	59	114	IPR001471	AP2/ERF domain
Pfam	PF00847	6.0E-11	59	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.5E-9	60	71	IPR001471	AP2/ERF domain
CDD	cd00018	4.47E-21	62	114	No hit	No description
PRINTS	PR00367	5.5E-9	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MQGEYRSSSE ESAAAAAAAA AAAAMAPLAA AAAAAVKMEE QAAMAPSAQQ HQQQQPRRQY 60 RGVRMRKWGK WVAEIREPHK RTRIWLGSYA TPVAAARAYD TAVFYLRGRS ARLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-13	58	114	4	61	ATERF1
3gcc_A	2e-13	58	114	4	61	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977035.1	1e-44	ethylene-responsive transcription factor RAP2-10-like
Swissprot	Q8W3M3	1e-30	RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
Swissprot	Q9SW63	1e-30	RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBL	A0A368RZW1	3e-43	A0A368RZW1_SETIT; Uncharacterized protein
STRING	Pavir.J27349.1.p	1e-40	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3943	30	75

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507]