PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01776.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 315aa    MW: 32782.3 Da    PI: 7.5351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01776.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.61.2e-18115172159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDg+ WrKYGqK+++g+e+pr    Ct+    gC+++k+v+ s+++p+  ++ Y geH+++
  Zmw_sc01776.1.g00160.1.am.mk 115 LDDGHGWRKYGQKSIQGAENPR----CTHMpdqGCKARKQVQVSDTNPSEYVVSYFGEHTCR 172
                                   58*******************6....9998888**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.959110174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-19111174IPR003657WRKY domain
SuperFamilySSF1182901.96E-18113174IPR003657WRKY domain
SMARTSM007741.8E-28115173IPR003657WRKY domain
PfamPF031066.8E-18116172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MASSGSSGPS GDRSPVPPEV VNDLLGVRQS AAMLQAMFHG SPTAERELVD GMMTKVTSAL  60
SALNTSGASS SVGRRGSSGG GSRNRAGASV AGPHRRSTFR RRTLSPFKET VTTKLDDGHG  120
WRKYGQKSIQ GAENPRCTHM PDQGCKARKQ VQVSDTNPSE YVVSYFGEHT CRDPSTVPIV  180
IEAAADASTN CANFISFGRP TTTTGAAHAV PPHRQQAVAP TMMLSRFAGY SSSLPAAQER  240
CGSEEAISGI PPAEQLGAVV GSSSTGTTMG SAPEYDHITG RCIDPGSFPS SPSSLGGFMG  300
SFGSFGDDDL FPFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20111172469OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802431.12e-73uncharacterized protein LOC112881781
TrEMBLA0A3L6QUJ92e-74A0A3L6QUJ9_PANMI; Putative WRKY transcription factor 38
STRINGSi030395m3e-72(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837