PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01776.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 826aa MW: 91983 Da PI: 8.0961 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.5 | 5.9e-19 | 265 | 364 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L+ Zmw_sc01776.1.g00100.1.sm.mkhc 265 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQ 342 99**************************555567778***************9989999999***9.************ PP TT-EEEEEE-SSSEE..EEEEE- CS B3 76 egDfvvFkldgrsefelvvkvfr 98 +gD+v+F++++ +++lv+++++ Zmw_sc01776.1.g00100.1.sm.mkhc 343 AGDTVTFSRIE-PGGKLVMGFRK 364 ********887.77777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-31 | 257 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-21 | 262 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.76E-24 | 263 | 364 | No hit | No description |
PROSITE profile | PS50863 | 11.589 | 265 | 366 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-16 | 265 | 364 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-22 | 265 | 365 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.685 | 526 | 576 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.4E-11 | 531 | 573 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 826 aa Download sequence Send to blast |
MIYLMAEEFN GSGQVVPKLF PSQRNLQIFG KSEELLPGRK FVQSPPITVD SINDDITIIS 60 KNNRPFIVRN IEVGQSSSIL RQKEIENGSR QIKWEPATLN IGDMGRMPFL TRTQSALESP 120 HGVQRDDSKD PITESTTNRS LSEARLSMTL GIANNGSKME ATSPVDRHML SPTTVIAEGR 180 ELTTSLLSPF QNAQRARHFL TRPPRVSEDA AFDPTKDVFS HLRVARPPTE GRGRNQLLPR 240 YWPRITDQEL QQISGDSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR 300 PLTIQDARGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ LQAGDTVTFS RIEPGGKLVM 360 GFRKATNTVS LPDSQISAIA NGSLLSETLF SSANENLPVV SGYPGFLQSI KGAADLHPSS 420 LYDHHVHSAD GDVSWPKTDK LGSRLDEGSL PFLQKKSRNI GSKSRRFLMD AEDALELKLT 480 WEEAQELLRP APTSKPTFVT IEDYEFEEYD EPPVFAKRSI FTIRATGEQD QWIQCDDCSK 540 WRRLPLNVIV VSKWTCTDNS WDTKSCSCSA PEELTTKELQ SVLQQYEEMR RRKGISYGMK 600 LNVAEMDGTS LDALATATVY GEIGNQGSTS VATTTKHPRH RPGCTCIVCI QPPSGKGPKH 660 SPSCTCNVCM TVKRRFKTLM MRKKQRQSER DEAEASKKIQ WASRDETEGS SLTRSPQTLD 720 TTRDSDVTMS DKQAADMSKG HIDLNFHPAV REDQEQHGSQ PRPASMMGLL EVATRPLDNY 780 MKQNGLTCLG GGEQGGSPST ATVPPAPHLK NVKYHKILKI GSYLDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 6e-68 | 243 | 368 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 672 | 683 | KRRFKTLMMRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958699.1 | 0.0 | B3 domain-containing protein Os07g0679700 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | K3ZQF4 | 0.0 | K3ZQF4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba00225.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6519 | 37 | 48 |
Publications ? help Back to Top | |||
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