PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01768.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 423aa MW: 45211.7 Da PI: 7.9453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01768.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.8e-08	164	209	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++ ++ Lr+l+P + a+i +v+YIk+Lq Zmw_sc01768.1.g00050.1.am.mk 164 SHIAVERNRRKQMTVHLAVLRSLMPCfY-------VKRASIIGGVVNYIKELQ 209 799*********************55.......77888**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.299	160	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	163	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-6	164	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-9	164	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.73E-10	164	213	No hit	No description
SMART	SM00353	3.2E-7	166	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MHSYSSCIYA LPSRLLYEPS TILMTIPVLR RELKEEGLPR AYLGRSPMAE VLCDQLFADD 60 DVVNGELLQH PADADDLFGI LQEWEDCVSG GSVEAALSSA ADAATSTSVA AKGNKRRSPQ 120 GRCDDSVLVQ EPAKKQRCSP PAVAVVAATT GESGATKTAT TSHSHIAVER NRRKQMTVHL 180 AVLRSLMPCF YVKRASIIGG VVNYIKELQQ LLQSLEAKKQ RKAYADQLVL SPRRPLPLKS 240 TPPMSPRPAV PIISPRTPPT SSSPYSTLRR QPSLPLLHLP LPLPPPRGSS AYESPAMTPT 300 SQESAASSSS SSSYLPSLDA IAAELCAYTA NSKQATASGG AVVLPEVKVE FSGANLVVKT 360 ASQRAPGQAV KVIAALEDRS SLEILHAKIS TVDDTALNSF TIKIGIECGL SADELVQEIQ 420 QCF

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MHSYSSCIYA LPSRLLYEPS TILMTIPVLR RELKEEGLPR AYLGRSPMAE VLCDQLFADD  60
DVVNGELLQH PADADDLFGI LQEWEDCVSG GSVEAALSSA ADAATSTSVA AKGNKRRSPQ  120
GRCDDSVLVQ EPAKKQRCSP PAVAVVAATT GESGATKTAT TSHSHIAVER NRRKQMTVHL  180
AVLRSLMPCF YVKRASIIGG VVNYIKELQQ LLQSLEAKKQ RKAYADQLVL SPRRPLPLKS  240
TPPMSPRPAV PIISPRTPPT SSSPYSTLRR QPSLPLLHLP LPLPPPRGSS AYESPAMTPT  300
SQESAASSSS SSSYLPSLDA IAAELCAYTA NSKQATASGG AVVLPEVKVE FSGANLVVKT  360
ASQRAPGQAV KVIAALEDRS SLEILHAKIS TVDDTALNSF TIKIGIECGL SADELVQEIQ  420
QCF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813040.1	1e-135	transcription factor SPEECHLESS-like
TrEMBL	A0A3L6PBQ3	1e-134	A0A3L6PBQ3_PANMI; Transcription factor SPEECHLESS-like
STRING	Sb10g020490.1	1e-133	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3484	35	77