PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01752.1.g00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 19011.6 Da PI: 10.436 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.4 | 3.5e-13 | 10 | 46 | 1 | 42 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42 ++y+GVr ++ +gr++AeIrdp + r+r++lg+f++ eA Zmw_sc01752.1.g00150.1.am.mk 10 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTFDS-AEA 46 68********.**********843...6**********.555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-8 | 10 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.01E-21 | 10 | 67 | No hit | No description |
SMART | SM00380 | 3.2E-22 | 11 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-22 | 11 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-14 | 11 | 66 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.199 | 11 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-8 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-8 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MCDTAAVAAP RYRGVRKRPW GRFAAEIRDP AKRARVWLGT FDSAEAXXXX AARNLRGPLA 60 RTNFPVVPRL PLTSSRPRGL VVAPAQATAP TCSSSSTVES SSGPRVGPKT AAAPRKRVVV 120 VLPRPAAPDV GCHSDCASST SVMDDGDDAS TVRSRVPFDL NLAPSMDGDL DAGTDLRLCL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-15 | 12 | 66 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-15 | 12 | 66 | 6 | 64 | ATERF1 |
3gcc_A | 3e-15 | 12 | 66 | 6 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822790.1 | 2e-49 | ethylene-responsive transcription factor 7-like | ||||
TrEMBL | A0A0A8Y8Q6 | 5e-65 | A0A0A8Y8Q6_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ga00187.1.p | 1e-54 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |