PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01736.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 460aa MW: 47918.1 Da PI: 10.1217

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01736.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	9.9e-08	419	445	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++e L+el+P + Zmw_sc01736.1.g00230.1.am.mk 419 SHSLAERARREKINARMELLKELVPGC 445 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-7	413	447	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-5	413	447	No hit	No description
PROSITE profile	PS50888	11.166	415	460	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-7	418	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	419	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MTGGRPSGNR SPDSGDRTQR PKDPLHGPVA TGADCVASWR PALADRCWLA QRCAAPGPGA 60 WPEKGTVAAG LFRSAHTEYQ PMATRARHDG TGGPPRDEWF ATSWTGWMDR DEWQHGTKTG 120 GGLFATLNRW AVANRQLEMP PRRPAGAWAP SAVARRAPRG PCPSGRRDVV KKILACWTSL 180 ASCFTGHRGP PLQPAGNAHS ASLLPSTPTP PHLSAAASYK CRHCLAPPLP PPPPFLSSRT 240 PPTSPASAAP MHHPSPPPQE PPVSRAEIQA LIPASSSAEP SSATSTTTAS GGGGGSFTAL 300 LGLPTSQAME LLLPGAAPPA PAPAPAFPSD PHLGDCAASF SAFASLSSPS PTPPPPPPPP 360 VAANAKRKAD PADRSSKVGK AAKKGKTAAD ETKPAGGDGE DEKPAYVHVR ARRGQATDSH 420 SLAERARREK INARMELLKE LVPGCSKVCG CYHLPFTPHV

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MTGGRPSGNR SPDSGDRTQR PKDPLHGPVA TGADCVASWR PALADRCWLA QRCAAPGPGA  60
WPEKGTVAAG LFRSAHTEYQ PMATRARHDG TGGPPRDEWF ATSWTGWMDR DEWQHGTKTG  120
GGLFATLNRW AVANRQLEMP PRRPAGAWAP SAVARRAPRG PCPSGRRDVV KKILACWTSL  180
ASCFTGHRGP PLQPAGNAHS ASLLPSTPTP PHLSAAASYK CRHCLAPPLP PPPPFLSSRT  240
PPTSPASAAP MHHPSPPPQE PPVSRAEIQA LIPASSSAEP SSATSTTTAS GGGGGSFTAL  300
LGLPTSQAME LLLPGAAPPA PAPAPAFPSD PHLGDCAASF SAFASLSSPS PTPPPPPPPP  360
VAANAKRKAD PADRSSKVGK AAKKGKTAAD ETKPAGGDGE DEKPAYVHVR ARRGQATDSH  420
SLAERARREK INARMELLKE LVPGCSKVCG CYHLPFTPHV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP46077	2	3