PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01733.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 312aa MW: 35368.3 Da PI: 5.7247 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.4 | 2.2e-19 | 23 | 109 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtse 74 W++ e+++Li+a++e++++lrrg+lk+++Weev++ + +++ +qC++k+e+l+kry+ + ++ Zmw_sc01733.1.g00050.1.sm.mk 23 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVAAEVaarcaatpGVNVQHKTGTQCRHKLEKLRKRYRTEGARPVT---- 99 *************************************999996644444488*****************98877764.... PP trihelix 75 ssstcpyfdqle 86 s +pyf++++ Zmw_sc01733.1.g00050.1.sm.mk 100 --SLWPYFRRMD 109 ..68*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.4E-20 | 21 | 111 | No hit | No description |
SMART | SM00595 | 2.0E-5 | 30 | 116 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAQDADESPR WPALKKSAPA QPWSHVETMH LIDAYEERWT ALRRGQLKAH QWEEVAAEVA 60 ARCAATPGVN VQHKTGTQCR HKLEKLRKRY RTEGARPVTS LWPYFRRMDR LERGPGATSS 120 ANPPAAESPP AGASDEEEVQ EEEEEEDEEE EEEELIPRNN NTRSINGIIR EFGSGLAPRH 180 PQLQQPLPSI TPSTAPPRKR VSYEAFQART AAPEAEKVKE DEVEMARRPF RYGGANAELS 240 AVLRDFSEGF MRLERRRMEV QWEIEQGWKE TEARQTRMLQ DAQHGLCDTI AVACAVPPKK 300 ARRDHGSNGD GF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820374.1 | 1e-145 | uncharacterized protein LOC112896572 | ||||
TrEMBL | A0A0A9FZH6 | 1e-146 | A0A0A9FZH6_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J15698.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |