PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01731.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 296aa MW: 31721.5 Da PI: 6.5142

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01731.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.8e-09	138	185	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka +L + ++Y++sLq Zmw_sc01731.1.g00160.1.sm.mk 138 SHSLAERVRRERISERMRMLQALVPGC----DKVIGKALVLDEIINYVQSLQ 185 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.80E-9	132	189	No hit	No description
SuperFamily	SSF47459	1.44E-16	132	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.053	134	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-16	134	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-6	138	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-9	140	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MADFSSHHSL LLEMPAALTN GHSTNLPGIL FSSQSHGDQA AAKASVASGG AAAMAAEESS 60 SAVVDTSPQG SASPMDRKRK ITEDSATLSS GHSKDCKEGK SKRGKRSSKE AEEKSATEDE 120 APKGYIHVRA RRGQATDSHS LAERVRRERI SERMRMLQAL VPGCDKVIGK ALVLDEIINY 180 VQSLQNQVEF LSMRIASMSP VLYGFGMDSD SLHDQAQKMG AMFQEALAMP GPVLSQVSPA 240 PSQAITDTTS TTAYSVQGQG TISFSQDSSS YLMQAVGEPR QELLNQLVFN NMCSFQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821629.1	1e-174	transcription factor bHLH137-like isoform X1
Swissprot	Q93W88	1e-53	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A3L6PU48	1e-176	A0A3L6PU48_PANMI; Uncharacterized protein
STRING	Pavir.Fa00144.1.p	1e-175	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]