PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01702.1.g00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 384aa MW: 41618.9 Da PI: 9.4727 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.9 | 7.1e-15 | 62 | 143 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessst 78 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s qCk++++ l+k+yk +++ +++ + Zmw_sc01702.1.g00160.1.am.mk 62 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDAQCKNRIDTLKKKYKVERAKRNS-------S 135 *************************************87889987333667**************99998886.......5 PP trihelix 79 cpyfdqle 86 +p+fd+l+ Zmw_sc01702.1.g00160.1.am.mk 136 WPFFDRLD 143 ******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-23 | 60 | 145 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MDDDAGASPS PSPSPSRSPS PLPIADPVTV ASAPPGHIAV AIPLRKPSPS SGGGGGGRED 60 AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKPPKS DAQCKNRIDT 120 LKKKYKVERA KRNSSWPFFD RLDDLLAPVY KLGSGSSSAA RNTPPMVPPR FSFPQRTRTQ 180 LQPSAGVKRR MPSPPPKPSA SSDSSDGFPP EPPLANGKRQ RVEEPTPANG AESRDHAQGL 240 RELALAIRRL GEVYERVESA KREQELRMEQ ERLEATRELE DQRVQFFLKM QMELSKATGG 300 AHSATPMAAA TAVDGNGSRR AAEATDVATS SNHKVRYRIK DSRHRHTAQQ PHYQYSQNNS 360 SAAAPSSGNG SDSDNKEDED EESQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815450.1 | 1e-166 | trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 1e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2T7F7W0 | 1e-165 | A0A2T7F7W0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J27535.1.p | 1e-169 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2404 | 30 | 69 |