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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01694.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20198.8 Da PI: 9.7753 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.5 | 6.6e-32 | 133 | 182 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Zmw_sc01694.1.g00080.1.am.mk 133 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 182 79***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-41 | 125 | 184 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.473 | 125 | 185 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.61E-41 | 126 | 183 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-29 | 126 | 184 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 127 | 181 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-33 | 127 | 147 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-27 | 134 | 181 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-33 | 147 | 162 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-33 | 162 | 183 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDQEVDDRGD VRKNVRSINA SVSGPGQRWR RPGDRVVEEV LVGKGERDAF ASIRDHHLSH 60 PASSSCAYPL SLSGSHSSPA PKEAHSIPPT MLNMMSDLSC GPSAKGKEQP APANSGPSAG 120 MSEKLGRGKI EIKRIENSTN RQVTFCKRRN GLLKKAYELS VLCDAEVALI VFSSRGRLYE 180 YANHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
5f28_A | 4e-21 | 125 | 182 | 1 | 58 | MEF2C |
5f28_B | 4e-21 | 125 | 182 | 1 | 58 | MEF2C |
5f28_C | 4e-21 | 125 | 182 | 1 | 58 | MEF2C |
5f28_D | 4e-21 | 125 | 182 | 1 | 58 | MEF2C |
6c9l_A | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-21 | 125 | 182 | 1 | 58 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105946.1 | 1e-45 | AGAMOUS-like protein | ||||
Refseq | XP_008654205.1 | 1e-45 | AGAMOUS-like protein isoform X1 | ||||
TrEMBL | A0A0A8XZ73 | 2e-49 | A0A0A8XZ73_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A0A9TLG6 | 2e-49 | A0A0A9TLG6_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G359952_P01 | 5e-45 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |