PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01691.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 513aa MW: 54745.8 Da PI: 8.9089

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01691.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Zmw_sc01691.1.g00050.1.am.mk 157 FVCEICGKGFQRDQNLQLHRRGH 179 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.92E-5	156	179	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	157	179	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	157	179	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	157	179	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	159	179	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	200	230	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.92E-5	230	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MVLALVVPLS LSPSSPFASP PIPADTVPFS PPALSLSLFL SASAIKAGRF LLSLPCARQL 60 LGASSRSLLE PGHRSSFFMF HQQQLLQEQG EAADQDSSMS NLTSSASGPN NPPPPPSPAP 120 AASAGNNKRK RSLPGNPDPD AEVVALSPAT LMATNRFVCE ICGKGFQRDQ NLQLHRRGHN 180 LPWKLKQRGT GKEAARKKVY VCPEASCVHH DPARALGDLT GIKKHFFRKH GEKKWKCDKC 240 SKKRDSFITH RAFCDALTEE SARAIGLNAA MHGAAPVHQA LLFSSTSHSQ QVMQQQQQQE 300 LAAFQDQQPQ QEVMQPQPPP PPPQQVQAAS QQQQHCNYAM KTEMPSPWPT MPYDHHAHPL 360 LQPLCAQSSA TSAPPPPQQQ QVPRASAHLS ATALLQKAAQ MGATISTAGG GGAHYIQMAG 420 AATSAPGSAS FGLGLPGLNA QQDAAMGGLA RSTFHGGSGE DGMTRDFLGL RAFSHRDILN 480 LAGLDSCIGA AQAQQQQQQQ SNNEQWHGMG SHG

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MVLALVVPLS LSPSSPFASP PIPADTVPFS PPALSLSLFL SASAIKAGRF LLSLPCARQL  60
LGASSRSLLE PGHRSSFFMF HQQQLLQEQG EAADQDSSMS NLTSSASGPN NPPPPPSPAP  120
AASAGNNKRK RSLPGNPDPD AEVVALSPAT LMATNRFVCE ICGKGFQRDQ NLQLHRRGHN  180
LPWKLKQRGT GKEAARKKVY VCPEASCVHH DPARALGDLT GIKKHFFRKH GEKKWKCDKC  240
SKKRDSFITH RAFCDALTEE SARAIGLNAA MHGAAPVHQA LLFSSTSHSQ QVMQQQQQQE  300
LAAFQDQQPQ QEVMQPQPPP PPPQQVQAAS QQQQHCNYAM KTEMPSPWPT MPYDHHAHPL  360
LQPLCAQSSA TSAPPPPQQQ QVPRASAHLS ATALLQKAAQ MGATISTAGG GGAHYIQMAG  420
AATSAPGSAS FGLGLPGLNA QQDAAMGGLA RSTFHGGSGE DGMTRDFLGL RAFSHRDILN  480
LAGLDSCIGA AQAQQQQQQQ SNNEQWHGMG SHG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969529.1	1e-175	protein indeterminate-domain 7
Swissprot	Q9LRW7	5e-87	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1E5UV96	1e-176	A0A1E5UV96_9POAL; Protein indeterminate-domain 9
STRING	Si001287m	1e-175	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]