PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01665.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 645aa MW: 69687.6 Da PI: 10.5858 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.9 | 6.5e-31 | 467 | 560 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k+ tpsdv+k++r+v+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL Zmw_sc01665.1.g00110.1.am.mk 467 FDKTVTPSDVGKLNRMVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 547 89*******************************5556799***************************************** PP -TT-EEEEEE-SS CS B3 75 kegDfvvFkldgr 87 ++gD+v F+++ + Zmw_sc01665.1.g00110.1.am.mk 548 NAGDVVGFYRSAE 560 *********6643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.749 | 314 | 389 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-9 | 347 | 395 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-4 | 351 | 381 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-13 | 351 | 389 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-9 | 352 | 389 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.74E-12 | 354 | 389 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 459 | 585 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.93E-28 | 465 | 558 | No hit | No description |
SuperFamily | SSF101936 | 1.07E-30 | 465 | 562 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.831 | 467 | 576 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-23 | 467 | 575 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-28 | 467 | 560 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MEVGMVGGGG GAPPEPEVAG ARWRTNAKSA RAAHFDVRRV LLLLATRGGI GPCGSPRSRA 60 VSCDRFVVAS PMRFTTFTAR PGVVVPYCGA LPVQVVRPSI HVLGDEAAVG IQQTGGPADE 120 FAVQQKNRVE IWGHGLARRG LIRIDSWMEV LQSAAEAGLA LAAVSLGSGF SDVDVTRWEL 180 RTSASPRAVI LQGRNMNPVV GTSAGELETA PRFMRIGRGI PSGFARGVHL AMPWSTLHVK 240 ATLHSLIHQL PHPTHTGGSA VASSPSFPTP MPHRHRVLSA QVSRCNGDMR EHLTKLPVNG 300 LVEVGGAANL DTLNYDARLA THPPTRLYIP LYTPLSYPFH PYAPNIFVQR QKHHRRVWLG 360 TFAGEADAAR AYDVAAQRFR GRDAVTNFRP LADADPDAAA ELRFLASRSK AEVVDMLRKH 420 TYFDELAQNR RAFAASAPTT TSSPLAGDHA AGSSPRPSPV AAREHLFDKT VTPSDVGKLN 480 RMVIPKQHAE KHFPLQLPSA GGESKGVLLN FEDAGGKVWR FRYSYWNSSQ SYVLTKGWSR 540 FVKEKGLNAG DVVGFYRSAE SDVADSKLFI DCKRRPNNTT AASMATPVTV SSPTRVTKAV 600 RLFGVDLLTA PTPESAMTGC KRARDFAATP PQAVFKKPLV ELALV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-50 | 460 | 576 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-50 | 460 | 576 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |