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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01637.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 23031.1 Da PI: 6.1488 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 61 | 101 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f Lr+l+P +K++ +++L +A++Y+k L Zmw_sc01637.1.g00180.1.sm.mk 61 ARERRHRISDRFRVLRSLVPGG-----GKMDTVSMLDQAIRYVKFL 101 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-14 | 57 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-12 | 58 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.58E-13 | 58 | 106 | No hit | No description |
SMART | SM00353 | 2.6E-12 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-7 | 61 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDPYHYPNMQ DPLGFPILHP PQPYIIHPAA GLISDSRGRG SGGGRRRPGA KLSTDPQSVA 60 ARERRHRISD RFRVLRSLVP GGGKMDTVSM LDQAIRYVKF LKAQVSLHQD VLMQDEEGRG 120 HEIAAAAYSG ADEVMMPSSD GRCAGNDVMQ PLQLPVQEAA SYAAAAAHQL QLRDPWQMSG 180 GANELPPLPP CVFVEEPAAA CYSEDVDLLG SY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105271.1 | 3e-70 | barren stalk 1 | ||||
Refseq | XP_020406751.1 | 3e-70 | transcription factor LAX PANICLE 1 | ||||
Swissprot | Q7XAQ6 | 1e-53 | LAX1_ORYSJ; Transcription factor LAX PANICLE 1 | ||||
TrEMBL | Q5MP56 | 6e-69 | Q5MP56_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G397518_P01 | 1e-69 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8553 | 32 | 43 |