PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01630.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 765aa    MW: 84024 Da    PI: 10.1105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01630.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.6e-18529578255
                                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Zmw_sc01630.1.g00070.1.sm.mkhc 529 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLSEVIEYIRFLQ 578
                                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.9E-24526599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.079527577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-18527601IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-15529578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-15529582No hitNo description
SMARTSM003532.5E-13533583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MGGDVIPVSR FLCRHRHHQA SKRLSIRTRP EVAVGKGMAL WNLAATGHMT HLDPCSDPST  60
DPYPRTTDFL PGPGRAGACR DGTDGSATLS EREPPHSGVS LFFYPPIHGM LIISGLRCRR  120
GCARIAPNRH NTTTSACARV NCYCRSSREH RGQLKPGTCS ISVPNQTRAA NARHGYAVTE  180
TEKRFCYKCR IKRPGTGRVK RRGQRGVEER AGPLPGVAAR GQRDLLSPSV SFHSSTHFAP  240
QFSSELELGA EALLLRLLLS PSRVRRRCNA WLWGCKVLPP ARRRLLEPFF SRVAVGDFFD  300
DLRRGDKATH DFLSLYSAAK DAAALPLIPD SKKVPAPPSQ GFFLKTHDFL QPLERPSSPT  360
PPPQQPAAEK LVNARHALPG GVGTFSISST AAAVPGAVKQ EPLWKTLPGH QWALPFAAAH  420
CVAVASARPQ QQQQQMPLER KADGGFMDAG SGSSGGAGFD DDDCHAARRE VSSSLKGDAS  480
VLQNPRLLRG SLVPFWRPDG GRELTVRVET KGGSCSGSAG TDQMPNTPRS KHSATEQRRR  540
SKINDRFQIL REILPQNDQK RDKASFLSEV IEYIRFLQEK VQKYEVSQQE WNQENAKVVP  600
WSNIYFRSFW ENAQELSEAN KKGCVPYREA DAPSNIPNDV ASQKQAELAK PLPAEDRAVN  660
SQMLKDPELA IDEGTISLSS QYSQGLLATL NHALQNSGID LSQASISVRI NLGKRAIKRP  720
AASANCTSED LTSQISYDQA IRQQQKSGDG ALEHPQAMKR HKSDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822754.11e-172transcription factor BIM1-like isoform X1
TrEMBLA0A2T7D8Q50.0A0A2T7D8Q5_9POAL; Uncharacterized protein
STRINGSi013622m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128