PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 249aa MW: 27748.9 Da PI: 6.7181

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01623.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd lv ++ +G +W++ ++ g+ R++k+c++rw +yl Zmw_sc01623.1.g00040.1.sm.mkhc 14 RGPWTPEEDRVLVAHIESHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	51.9	1.7e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w++ Zmw_sc01623.1.g00040.1.sm.mkhc 67 RGNFTREEEDAIIQLHHMLGNR-WSAIAARLP-GRTDNEIKNVWHTN 111 89******************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.139	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.85E-30	10	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.28E-10	16	61	No hit	No description
PROSITE profile	PS51294	24.927	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.57E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGRAPCCEKM GLKRGPWTPE EDRVLVAHIE SHGHSNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TREEEDAIIQ LHHMLGNRWS AIAARLPGRT DNEIKNVWHT NLKKRLEPKP 120 SNPQQASKRS RHKKQRHEVV LPNGPTAVPV SPEQSLSTTT TSAATTDYSA ASSSSTLENA 180 DSFSSEEFQI DDSFWSETLA MPVDSSDSSG VETGDDFGAL SAPSSSDDMD FWLQVFMQAG 240 GVENYLPQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269\|PubMed:28062835}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress and flooding. {ECO:0000269\|PubMed:28062835}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798785.1	1e-130	transcription factor MYB30-like
Swissprot	Q6K1S6	1e-112	MYB30_ORYSJ; Transcription factor MYB30
TrEMBL	A0A2S3GRM6	1e-129	A0A2S3GRM6_9POAL; Uncharacterized protein
TrEMBL	A0A2T7F975	1e-129	A0A2T7F975_9POAL; Uncharacterized protein
STRING	GRMZM2G095904_P01	1e-124	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Lv Y, et al. The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression. Plant Physiol., 2017. 173(2): p. 1475-1491 [PMID:28062835]