PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01622.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 423aa MW: 45071.2 Da PI: 10.297

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01622.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.3e-12	217	260	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ eLr+++P+ +K++Ka++ + A+ YI +Lq Zmw_sc01622.1.g00090.1.am.mk 217 VMERDRRRRLNEKLYELRSVVPNI-----TKMDKASVIRDAIAYIEKLQ 260 68*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.815	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-16	212	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-13	213	264	No hit	No description
SMART	SM00353	2.3E-14	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	216	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-10	217	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MTRTGGQQPT GAAVYGRTTQ GPAPACPVLR LRSLTGGIHP PDVLLAAHAG HQMLSALSAL 60 GVAWLELLRT PTPTSSSYSV PHKARTLSHK NMAINEQTVA SSISAGGCDL RAACLQVDGL 120 RGSGQWRRTC WAWASTSTGR HRLASSSTHT TLTSPASTAA NSTSGLCPYR EGSNSPDGAN 180 SSNAAAVPTA SSSPPSPQPL LLLGGGGGGH AGSKNMVMER DRRRRLNEKL YELRSVVPNI 240 TKMDKASVIR DAIAYIEKLQ EEERRVLAEI SALESSTAVR SENAGRDADD ADSLPRRKKP 300 RRVSPADDTR AASSLPLKIL EVQVSEAWEK LAVLSVRCSR GRDAVPKVCR ALEPLRLRNV 360 TATVAAVGDT VVHTMFAQVT PNNNSLLLTD IAGAWLAVPF RTLWLHASLS CACLWDRRMT 420 STP

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MTRTGGQQPT GAAVYGRTTQ GPAPACPVLR LRSLTGGIHP PDVLLAAHAG HQMLSALSAL  60
GVAWLELLRT PTPTSSSYSV PHKARTLSHK NMAINEQTVA SSISAGGCDL RAACLQVDGL  120
RGSGQWRRTC WAWASTSTGR HRLASSSTHT TLTSPASTAA NSTSGLCPYR EGSNSPDGAN  180
SSNAAAVPTA SSSPPSPQPL LLLGGGGGGH AGSKNMVMER DRRRRLNEKL YELRSVVPNI  240
TKMDKASVIR DAIAYIEKLQ EEERRVLAEI SALESSTAVR SENAGRDADD ADSLPRRKKP  300
RRVSPADDTR AASSLPLKIL EVQVSEAWEK LAVLSVRCSR GRDAVPKVCR ALEPLRLRNV  360
TATVAAVGDT VVHTMFAQVT PNNNSLLLTD IAGAWLAVPF RTLWLHASLS CACLWDRRMT  420
STP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823076.1	8e-81	transcription factor bHLH35-like isoform X1
TrEMBL	A0A0A9IMR0	2e-84	A0A0A9IMR0_ARUDO; Uncharacterized protein
STRING	Pavir.Gb02374.1.p	3e-75	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1044	38	133