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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01600.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ARF | ||||||||
Protein Properties | Length: 625aa MW: 68067.4 Da PI: 6.8549 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.1e-24 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+++ Zmw_sc01600.1.g00080.1.sm.mkhc 123 FAKTLTQSDANNGGGFSVPRYCAETIlpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQK 199 89****************************996555555..8999********************************** PP T--TT-EEEEEE-SSSEE..EEEEE-S CS B3 73 gLkegDfvvFkldgrsefelvvkvfrk 99 +L +gD++vF +++ +el+v+++r+ Zmw_sc01600.1.g00080.1.sm.mkhc 200 KLVAGDSIVFL--RTEHGELCVGIRRA 224 ***********..55999*******97 PP | |||||||
2 | Auxin_resp | 87.8 | 2.1e-29 | 279 | 347 | 1 | 68 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsd 68 aa+ a+ ++FevvY+Prast+eFvvk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ Zmw_sc01600.1.g00080.1.sm.mkhc 279 AASLAARCQPFEVVYYPRASTPEFVVKAALVQNAMRIQWCPGMRFKMAFETEDSSRISWfMGTIASVQV 347 67889999**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-36 | 114 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.97E-29 | 118 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.84E-22 | 121 | 223 | No hit | No description |
PROSITE profile | PS50863 | 12.929 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-22 | 123 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-21 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.2E-24 | 279 | 347 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.307 | 530 | 608 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MKEAAEERGL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAQGGGGGG GAADLAVAVG 60 PRALPALVLC CVAGVRFLAD PETDEVFAKI RLVPVAPGEA DFRDEHDELG GDPAEARDKL 120 PSFAKTLTQS DANNGGGFSV PRYCAETILP KLDYRADPPV QTVLAKDVHG EVWKFRHIYR 180 GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RTEHGELCVG IRRAKRVSFG GMESMSGWNA 240 PGYGAFSAFM KEEENKLMKG AGGYTRGRGK VKIADVVDAA SLAARCQPFE VVYYPRASTP 300 EFVVKAALVQ NAMRIQWCPG MRFKMAFETE DSSRISWFMG TIASVQVTWD EPDLLQNVKC 360 VNPWLVELVS SIPPIHLGPF SPPRKKLRVP QHPDFPFDGQ LLNPIFRGNP LGPSNSPLCC 420 FPDNAPAGIQ GARHAQFGLS LTDHQLNRLG PEKSDDRKKP HIMLFGKPIL TEQQMNSRGS 480 SETLSPNTTG NSSSNGSVPK AANVSDGSGS SICVGFTSQG HEASELGLEA GHCKVFMESE 540 DVGRTIDVSV FASYEELYGQ LADMFGIEKA EIISQLRYHD AAGAVKHAGD EPFSDFMKVV 600 RRLTIIEGSE GRLQKPLMEC VVERV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-65 | 10 | 371 | 51 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982839.1 | 0.0 | auxin response factor 22 | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | K4A6M0 | 0.0 | K4A6M0_SETIT; Auxin response factor | ||||
STRING | Si034525m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Publications ? help Back to Top | |||
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