PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01560.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 342aa MW: 38247.5 Da PI: 11.8017

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01560.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	7.9e-06	268	308	15	54
HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 +i + +++L+ llP +s + +s+ s L++++ YIksL Zmw_sc01560.1.g00100.1.am.mk 268 EISELISKLQALLPASSrRRGSGQASTTKLLKETCSYIKSL 308 68999********555999999**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.835	253	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.07E-6	267	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-6	268	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MSGAAGAHAA PSAAGAIDRR TCRVTQSNAM LAARRRQEWR PRDLRRRQPP SPHPGTPLTW 60 ATRPPQAAAV VPVPRSIERA NHAYNHQLLE RERARAVSKL YRPARECRGR VSFSRSRAPP 120 PEQSPAPREH VRSREGRSRR TLPPRCPVGG LYVTRPTWQR RRGSTSTPRD WRAFGRRGGQ 180 LDVTLIGAYI VVLYCCTPLP FCLPHNTLLQ PSKKSDLERL TGPLFPPRTL LPVRERDHSL 240 SAAGEAKHDE TSRMSGRRSS RGNISDEEIS ELISKLQALL PASSRRRGSG QASTTKLLKE 300 TCSYIKSLHR EVDDLSDRLS DLMSTMDHNS PGAEIIRSIL RS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MSGAAGAHAA PSAAGAIDRR TCRVTQSNAM LAARRRQEWR PRDLRRRQPP SPHPGTPLTW  60
ATRPPQAAAV VPVPRSIERA NHAYNHQLLE RERARAVSKL YRPARECRGR VSFSRSRAPP  120
PEQSPAPREH VRSREGRSRR TLPPRCPVGG LYVTRPTWQR RRGSTSTPRD WRAFGRRGGQ  180
LDVTLIGAYI VVLYCCTPLP FCLPHNTLLQ PSKKSDLERL TGPLFPPRTL LPVRERDHSL  240
SAAGEAKHDE TSRMSGRRSS RGNISDEEIS ELISKLQALL PASSRRRGSG QASTTKLLKE  300
TCSYIKSLHR EVDDLSDRLS DLMSTMDHNS PGAEIIRSIL RS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33989	3	4