PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01553.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 252aa    MW: 28127.6 Da    PI: 5.2428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01553.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.84.6e-071260255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GV++ + +g+W++ I        r    + +g fgtae Aa a+++  +++ g
  Zmw_sc01553.1.g00110.1.sm.mk 12 QYRGVTRLP-NGKWRSIIFN------RddYEYTIGDFGTAEAAALAHDRVILAILG 60
                                  69*******.8****88544......346999***************998777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.1291271IPR001471AP2/ERF domain
SMARTSM003801.1E-41277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-101271IPR001471AP2/ERF domain
CDDcd000189.18E-121273No hitNo description
SuperFamilySSF541711.7E-91270IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MATAVPPTEV LQYRGVTRLP NGKWRSIIFN RDDYEYTIGD FGTAEAAALA HDRVILAILG  60
PDASAEVLNF RAAFSDTELR FLRGRHSPAR CVAGVVAMLR KGEYDAEFAR FAEHAFDAYM  120
DPELAQDVAS FRFAHNDALL RRKEAAVVAA AGANVDPAAR AKAERDAERE VFLEAVKNKA  180
NDEAWVKSYH RRRRQFGPTV EDENRWPPVV PAADVEIDDW LPGEELIYLP HGSSYVDEMT  240
LGDGLAKKEH RA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UKQ21e-106A0A1E5UKQ2_9POAL; Uncharacterized protein
TrEMBLC5WM801e-106C5WM80_SORBI; Uncharacterized protein
STRINGSb01g022380.11e-106(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718