PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01547.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 728aa MW: 77728.1 Da PI: 6.8742 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 98.8 | 4.7e-31 | 66 | 150 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k+++ g++rspk+C+ek+en+ k+yk++k+g+ +r++++ +++ Zmw_sc01547.1.g00050.1.am.mk 66 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAAMGYNRSPKKCREKFENVDKYYKRTKDGRAGRSDGKA--YRF 144 8*********************************************************************966665..*** PP trihelix 82 fdqlea 87 f++lea Zmw_sc01547.1.g00050.1.am.mk 145 FSELEA 150 ***985 PP | |||||||
2 | trihelix | 109 | 3.1e-34 | 436 | 521 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW++ ev+aLi++r+e+e r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpy Zmw_sc01547.1.g00050.1.am.mk 436 RWPQAEVHALIQLRTELEARYQDNGPKGPLWEDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKDSNKKR-PEDSKTCPY 515 8*********************************************************************8.99******* PP trihelix 82 fdqlea 87 ++ql+a Zmw_sc01547.1.g00050.1.am.mk 516 YHQLDA 521 ****85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.306 | 59 | 123 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0012 | 63 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.0E-21 | 65 | 151 | No hit | No description |
CDD | cd12203 | 9.66E-30 | 65 | 130 | No hit | No description |
SMART | SM00717 | 0.0036 | 433 | 495 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.82E-32 | 435 | 500 | No hit | No description |
PROSITE profile | PS50090 | 7.155 | 435 | 493 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.7E-24 | 436 | 522 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-4 | 436 | 492 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MQQQPGMPSF SPTAGAGTTA SQHAQPSEPS GAGGSAPPPA GGSIDHEGGL SAGGDEGDRS 60 GSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAAMGYNR SPKKCREKFE 120 NVDKYYKRTK DGRAGRSDGK AYRFFSELEA LHGASSPHPP PASLAPTPVA MAPPAAFPLG 180 VVPSMAAPAM RRAEPPPSSV VTMTPAAPTA GGVTCMTTAG DVSFSSSSDG EDTDQETGDG 240 GKRKRRDSDR GGGSSKMMRF FEGLMRQVME RQEEMQQRFI EAIERREQDR MIRDEAWRRQ 300 EVARLAREQD ALAQERAMAA TRDAAVVAFI QRITGQTIPM PPPSSLGVSP PTMISQALKP 360 TPVASAAPAP PPQHQHRQTP SPVQPAPKTH TTVPPISTQP QKQHMPQPES KDSIVVRAPA 420 ESQDTMGSGG APSPSRWPQA EVHALIQLRT ELEARYQDNG PKGPLWEDIS AGMRRLGYNR 480 SAKRCKEKWE NINKYFKKVK DSNKKRPEDS KTCPYYHQLD ALYRSKALAS SGAGGAAPHP 540 PPEAVTVLAA VPLSQTAPHQ AVGGGGNKQD CSSVRNGNGC ASSDNGGGMQ TQGSNGGVTP 600 NTISLPVEGG SGNGTSTKKE DNIMMKETPQ PVSMNDSYVN DRMDAGDSDS MDDDEDDFDE 660 DEDEGDVGSG GNNNKTMQYE IQFQRQHQHQ HQSQSQGSVD IRPNASGGAG SGPGPATTSG 720 SFLTMVHH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791925.1 | 0.0 | trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A2T7CIN4 | 0.0 | A0A2T7CIN4_9POAL; Uncharacterized protein | ||||
STRING | Si034382m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |