PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01533.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 877aa MW: 93924.6 Da PI: 9.0783

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01533.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.4e-52	447	575	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat Zmw_sc01533.1.g00200.1.am.mk 447 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 526 69**************************.9***********952444443456****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk+++s ++ +g++ktLvfykgrap+g+k+dW+mheyrl Zmw_sc01533.1.g00200.1.am.mk 527 AAGFWKATGRDKAIYS-CTRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 575 ************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-53	442	577	IPR003441	NAC domain
PROSITE profile	PS51005	51.483	447	677	IPR003441	NAC domain
Pfam	PF02365	2.7E-27	448	575	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MGDERSSSSL TEFASTARSR RAEYRSSYMS PPAGCSGFVL LSRCAVATSN SRREISAEER 60 EGGHDRSSAP LLSQPEKGKG ELAIEGIDRH HNANKHHAVL LACRYTSIIC PETRDWTTSS 120 VSFLGTASTG ARSAAGEQRR CRAPCAGGGD RNIITSGLRP PPPPPPPPPG RWGGDADAAR 180 DRYTLTAIKR TGFTGHDAAF MGIGERECYY YAYSNYVALR ADYHLTDGCN SPASTAVCED 240 PDGTDTPRDY HRSYTHQTRQ TASPAISADS DGQRYGRAKR KATATRGTVQ SLEKNTGISF 300 SVAVAGAVIV VAVVAAVVTL AIPGTHATAA QHHSIDGRVI LPRPAGVTRR RFRLAMLFRR 360 FLRSCVMALD GAPSPFPRPL PHAPPVATHR LPPSLPPFLP PRPGWRGPPS SLAPHCIVGF 420 SLFAFSLMVG GTSLASAKLI PLGSSAVPPG FRFHPTEEEL LTYYLKKKVA SERIDLDVIR 480 DVDLNKLEPW DIQEKCRIGS GPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI 540 YSCTRRIGMR KTLVFYKGRA PHGQKSDWIM HEYRLDDVQT PAAGVDPYYP SPPPPPALEL 600 GLGVPGLLVE ISVAGGEVVG LGSPRKATEF GHQQDHQTCV SKGQPKTAGR VRMRGGAAAG 660 DQAAQEEGWV ICRVFKKKNL VLHHGQSSGG GGTTTAATAA SKTAAATTME SSPTSNGSSV 720 TVTDQVKAQL LHSASDDALD HILQYIGRSC HTNNEQDTKP PPALQLDHHL AATTATACPA 780 GSSFYGRFMK LPPLEHVGAG LLPNPAGYAA DASGIADWDS LDRLAAYEFN GLSDASKNMV 840 AFLDEPNAAA GTGDGDLWSL ARSSVSSLHP DLTRNNV

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MGDERSSSSL TEFASTARSR RAEYRSSYMS PPAGCSGFVL LSRCAVATSN SRREISAEER  60
EGGHDRSSAP LLSQPEKGKG ELAIEGIDRH HNANKHHAVL LACRYTSIIC PETRDWTTSS  120
VSFLGTASTG ARSAAGEQRR CRAPCAGGGD RNIITSGLRP PPPPPPPPPG RWGGDADAAR  180
DRYTLTAIKR TGFTGHDAAF MGIGERECYY YAYSNYVALR ADYHLTDGCN SPASTAVCED  240
PDGTDTPRDY HRSYTHQTRQ TASPAISADS DGQRYGRAKR KATATRGTVQ SLEKNTGISF  300
SVAVAGAVIV VAVVAAVVTL AIPGTHATAA QHHSIDGRVI LPRPAGVTRR RFRLAMLFRR  360
FLRSCVMALD GAPSPFPRPL PHAPPVATHR LPPSLPPFLP PRPGWRGPPS SLAPHCIVGF  420
SLFAFSLMVG GTSLASAKLI PLGSSAVPPG FRFHPTEEEL LTYYLKKKVA SERIDLDVIR  480
DVDLNKLEPW DIQEKCRIGS GPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI  540
YSCTRRIGMR KTLVFYKGRA PHGQKSDWIM HEYRLDDVQT PAAGVDPYYP SPPPPPALEL  600
GLGVPGLLVE ISVAGGEVVG LGSPRKATEF GHQQDHQTCV SKGQPKTAGR VRMRGGAAAG  660
DQAAQEEGWV ICRVFKKKNL VLHHGQSSGG GGTTTAATAA SKTAAATTME SSPTSNGSSV  720
TVTDQVKAQL LHSASDDALD HILQYIGRSC HTNNEQDTKP PPALQLDHHL AATTATACPA  780
GSSFYGRFMK LPPLEHVGAG LLPNPAGYAA DASGIADWDS LDRLAAYEFN GLSDASKNMV  840
AFLDEPNAAA GTGDGDLWSL ARSSVSSLHP DLTRNNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-43	447	575	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810838.1	1e-157	NAC domain-containing protein 43-like
TrEMBL	A0A2S3HM67	1e-155	A0A2S3HM67_9POAL; Uncharacterized protein
STRING	Sb10g002120.1	1e-148	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1597	38	112