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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01533.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 877aa MW: 93924.6 Da PI: 9.0783 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.4e-52 | 447 | 575 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat Zmw_sc01533.1.g00200.1.am.mk 447 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 526 69****************************.9***************952444443456********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk+++s ++ +g++ktLvfykgrap+g+k+dW+mheyrl Zmw_sc01533.1.g00200.1.am.mk 527 AAGFWKATGRDKAIYS-CTRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 575 ****************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-53 | 442 | 577 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.483 | 447 | 677 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-27 | 448 | 575 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MGDERSSSSL TEFASTARSR RAEYRSSYMS PPAGCSGFVL LSRCAVATSN SRREISAEER 60 EGGHDRSSAP LLSQPEKGKG ELAIEGIDRH HNANKHHAVL LACRYTSIIC PETRDWTTSS 120 VSFLGTASTG ARSAAGEQRR CRAPCAGGGD RNIITSGLRP PPPPPPPPPG RWGGDADAAR 180 DRYTLTAIKR TGFTGHDAAF MGIGERECYY YAYSNYVALR ADYHLTDGCN SPASTAVCED 240 PDGTDTPRDY HRSYTHQTRQ TASPAISADS DGQRYGRAKR KATATRGTVQ SLEKNTGISF 300 SVAVAGAVIV VAVVAAVVTL AIPGTHATAA QHHSIDGRVI LPRPAGVTRR RFRLAMLFRR 360 FLRSCVMALD GAPSPFPRPL PHAPPVATHR LPPSLPPFLP PRPGWRGPPS SLAPHCIVGF 420 SLFAFSLMVG GTSLASAKLI PLGSSAVPPG FRFHPTEEEL LTYYLKKKVA SERIDLDVIR 480 DVDLNKLEPW DIQEKCRIGS GPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI 540 YSCTRRIGMR KTLVFYKGRA PHGQKSDWIM HEYRLDDVQT PAAGVDPYYP SPPPPPALEL 600 GLGVPGLLVE ISVAGGEVVG LGSPRKATEF GHQQDHQTCV SKGQPKTAGR VRMRGGAAAG 660 DQAAQEEGWV ICRVFKKKNL VLHHGQSSGG GGTTTAATAA SKTAAATTME SSPTSNGSSV 720 TVTDQVKAQL LHSASDDALD HILQYIGRSC HTNNEQDTKP PPALQLDHHL AATTATACPA 780 GSSFYGRFMK LPPLEHVGAG LLPNPAGYAA DASGIADWDS LDRLAAYEFN GLSDASKNMV 840 AFLDEPNAAA GTGDGDLWSL ARSSVSSLHP DLTRNNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-43 | 447 | 575 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810838.1 | 1e-157 | NAC domain-containing protein 43-like | ||||
TrEMBL | A0A2S3HM67 | 1e-155 | A0A2S3HM67_9POAL; Uncharacterized protein | ||||
STRING | Sb10g002120.1 | 1e-148 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |